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Sun, Youfang; Sheng, Huaxia; Rädecker, Nils; Lan, Yi; Tong, Haoya; Huang, Lintao; Jiang, Lei; Diaz-Pulido, Guillermo; Zou, Bobo; Zhang, Yuyang; Kao, Shuh-Ji; Qian, Pei Yuan; Huang, Hui (2024): Seawater carbonate chemistry and nutrient cycling in the Pocillopora damicornis larval host Symbiodiniaceae symbiosis [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.973984

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Published: 2024-12-05 • DOI registered: 2025-01-03

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Abstract:
In this study, we used controlled aquaria experiments to investigate the effects of acidification and elevated temperature treatments on nutrient cycling in the larval hostSymbiodiniaceae symbiosis to elucidate the processes shaping symbiotic interactions. Using P. damicornis larvae harboring Durusdinium spp., we combined physiological measurements of larval performance with stable isotope labeling and analysis to explore the role of carbon and nitrogen assimilation in the symbiosis. First, we tested how experimental acidification (1000 µatm) and elevated temperature (32 °C) affect Symbiodiniaceae density and primary production. Second, we examined the effects of these conditions on larval carbon and nitrogen assimilation.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from FigShare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-05.
Keyword(s):
Animalia; Biomass/Abundance/Elemental composition; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mortality/Survival; North Pacific; Other metabolic rates; Pelagos; Pocillopora damicornis; Primary production/Photosynthesis; Reproduction; Respiration; Species interaction; Temperature; Tropical; Zooplankton
Related to:
Sun, Youfang; Sheng, Huaxia; Rädecker, Nils; Lan, Yi; Tong, Haoya; Huang, Lintao; Jiang, Lei; Diaz-Pulido, Guillermo; Zou, Bobo; Zhang, Yuyang; Kao, Shuh-Ji; Qian, Pei Yuan; Huang, Hui (2024): Symbiodiniaceae algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature. Communications Biology, 7(1), 1528, https://doi.org/10.1038/s42003-024-07203-4
Source:
Sun, Youfang; Sheng, Huaxia; Rädecker, Nils; Lan, Yi; Tong, Haoya; Huang, Lintao; Jiang, Lei; Diaz-Pulido, Guillermo; Zou, Bobo; Kao, Shuh-Ji; Qian, Pei Yuan; Huang, Hui (2024): Algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.26392588.V2
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 18.200000 * Longitude: 109.466600
Date/Time Start: 2018-09-01T00:00:00 * Date/Time End: 2018-09-30T00:00:00
Event(s):
Luhuitou_fringing_reef_OA * Latitude: 18.200000 * Longitude: 109.466600 * Date/Time Start: 2018-09-01T00:00:00 * Date/Time End: 2018-09-30T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeHuang, Hui
2Species, unique identificationSpecies UIDHuang, Hui
3Species, unique identification (URI)Species UID (URI)Huang, Hui
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Huang, Hui
5TreatmentTreatHuang, Hui
6ReplicateReplHuang, Hui
7SurvivalSurvival%Huang, Hui
8SettlementSettlem%Huang, Hui
9Symbiont density per larvaesymbiont/larv#/#Huang, Huiper larvae
10Chlorophyll a per larvaeChl a/larvng/#Huang, Hui
11Net photosynthesis rate, oxygen, per individualPN O2/indnmol/#/minHuang, Huiper larvae
12Respiration rate, oxygen, per individualResp O2/indnmol/#/minHuang, Huilight-enhanced, per larvae
13Gross photosynthesis rate, oxygen, per individualPG O2/indnmol/#/minHuang, Huiper larvae
14Respiration rate, oxygen, per individualResp O2/indnmol/#/minHuang, Huidark, per larvae
15Net photosynthesis/dark respiration ratioPN/DRHuang, Hui
16Chlorophyll a per cellChl a/cellpg/#Huang, Huiper symbiodiniaceae cell
17Net photosynthesis rate, oxygen, per individualPN O2/indnmol/#/minHuang, Huiper symbiodiniaceae cell
18Respiration rate, oxygen, per individualResp O2/indnmol/#/minHuang, Huilight-enhanced, per symbiodiniaceae cell
19Gross photosynthesis rate, oxygen, per individualPG O2/indnmol/#/minHuang, Huiper symbiodiniaceae cell
20Maximum photochemical quantum yield of photosystem IIFv/FmHuang, Hui
21Carbon/Nitrogen ratioC/NHuang, Hui
22Time point, descriptiveTime pointHuang, Hui
23Atom percent excessAPE%Huang, Hui13C of larvae
24Atom percent excessAPE%Huang, Hui15N of larvae
25pH, total scalepHTHuang, HuiPotentiometric titration
26pH, standard errorpH std e±Huang, HuiPotentiometric titrationtotal scale
27SalinitySalHuang, Hui
28Salinity, standard errorSal std e±Huang, Hui
29Temperature, waterTemp°CHuang, Hui
30Temperature, water, standard errorT std e±Huang, Hui
31Alkalinity, totalATµmol/kgHuang, HuiSpectrophotometric
32Alkalinity, total, standard errorAT std e±Huang, HuiSpectrophotometric
33Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmHuang, HuiCalculated using CO2SYS
34Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Huang, HuiCalculated using CO2SYS
35Aragonite saturation stateOmega ArgHuang, HuiCalculated using CO2SYS
36Aragonite saturation state, standard errorOmega Arg std e±Huang, HuiCalculated using CO2SYS
37Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
880 data points

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