Citation:

PANGAEA.973984 (DOI registration in progress)

Name: Seawater carbonate chemistry and nutrient cycling in the Pocillopora damicornis larval host Symbiodiniaceae symbiosis
Published: 2024
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Biomass/Abundance/Elemental composition; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mortality/Survival; North Pacific; Other metabolic rates; Pelagos; Pocillopora damicornis; Primary production/Photosynthesis; Reproduction; Respiration; Species interaction; Temperature; Tropical; Zooplankton

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Abstract:

In this study, we used controlled aquaria experiments to investigate the effects of acidification and elevated temperature treatments on nutrient cycling in the larval hostSymbiodiniaceae symbiosis to elucidate the processes shaping symbiotic interactions. Using P. damicornis larvae harboring Durusdinium spp., we combined physiological measurements of larval performance with stable isotope labeling and analysis to explore the role of carbon and nitrogen assimilation in the symbiosis. First, we tested how experimental acidification (1000 µatm) and elevated temperature (32 °C) affect Symbiodiniaceae density and primary production. Second, we examined the effects of these conditions on larval carbon and nitrogen assimilation.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from FigShare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-05.

Keyword(s):

Animalia; Biomass/Abundance/Elemental composition; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mortality/Survival; North Pacific; Other metabolic rates; Pelagos; Pocillopora damicornis; Primary production/Photosynthesis; Reproduction; Respiration; Species interaction; Temperature; Tropical; Zooplankton

Related to:

Sun, Youfang; Sheng, Huaxia; Rädecker, Nils; Lan, Yi; Tong, Haoya; Huang, Lintao; Jiang, Lei; Diaz-Pulido, Guillermo; Zou, Bobo; Zhang, Yuyang; Kao, Shuh-Ji; Qian, Pei Yuan; Huang, Hui (2024): Symbiodiniaceae algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature. Communications Biology, 7(1), 1528, https://doi.org/10.1038/s42003-024-07203-4

Source:

Sun, Youfang; Sheng, Huaxia; Rädecker, Nils; Lan, Yi; Tong, Haoya; Huang, Lintao; Jiang, Lei; Diaz-Pulido, Guillermo; Zou, Bobo; Kao, Shuh-Ji; Qian, Pei Yuan; Huang, Hui (2024): Algal symbionts of Pocillopora damicornis larvae provide more carbon to their coral host under elevated levels of acidification and temperature [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.26392588.V2

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 18.200000 * Longitude: 109.466600

Date/Time Start: 2018-09-01T00:00:00 * Date/Time End: 2018-09-30T00:00:00

Event(s):

Luhuitou_fringing_reef_OA * Latitude: 18.200000 * Longitude: 109.466600 * Date/Time Start: 2018-09-01T00:00:00 * Date/Time End: 2018-09-30T00:00:00

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Huang, Hui
2	Species, unique identification	Species UID		Huang, Hui
3	Species, unique identification (URI)	Species UID (URI)		Huang, Hui
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Huang, Hui
5	Treatment	Treat		Huang, Hui
6	Replicate	Repl		Huang, Hui
7	Survival	Survival	%	Huang, Hui
8	Settlement	Settlem	%	Huang, Hui
9	Symbiont density per larvae	symbiont/larv	#/#	Huang, Hui		per larvae
10	Chlorophyll a per larvae	Chl a/larv	ng/#	Huang, Hui
11	Net photosynthesis rate, oxygen, per individual	PN O2/ind	nmol/#/min	Huang, Hui		per larvae
12	Respiration rate, oxygen, per individual	Resp O2/ind	nmol/#/min	Huang, Hui		light-enhanced, per larvae
13	Gross photosynthesis rate, oxygen, per individual	PG O2/ind	nmol/#/min	Huang, Hui		per larvae
14	Respiration rate, oxygen, per individual	Resp O2/ind	nmol/#/min	Huang, Hui		dark, per larvae
15	Net photosynthesis/dark respiration ratio	PN/DR		Huang, Hui
16	Chlorophyll a per cell	Chl a/cell	pg/#	Huang, Hui		per symbiodiniaceae cell
17	Net photosynthesis rate, oxygen, per individual	PN O2/ind	nmol/#/min	Huang, Hui		per symbiodiniaceae cell
18	Respiration rate, oxygen, per individual	Resp O2/ind	nmol/#/min	Huang, Hui		light-enhanced, per symbiodiniaceae cell
19	Gross photosynthesis rate, oxygen, per individual	PG O2/ind	nmol/#/min	Huang, Hui		per symbiodiniaceae cell
20	Maximum photochemical quantum yield of photosystem II	Fv/Fm		Huang, Hui
21	Carbon/Nitrogen ratio	C/N		Huang, Hui
22	Time point, descriptive	Time point		Huang, Hui
23	Atom percent excess	APE	%	Huang, Hui		13C of larvae
24	Atom percent excess	APE	%	Huang, Hui		15N of larvae
25	pH, total scale	pHT		Huang, Hui	Potentiometric titration
26	pH, standard error	pH std e	±	Huang, Hui	Potentiometric titration	total scale
27	Salinity	Sal		Huang, Hui
28	Salinity, standard error	Sal std e	±	Huang, Hui
29	Temperature, water	Temp	°C	Huang, Hui
30	Temperature, water, standard error	T std e	±	Huang, Hui
31	Alkalinity, total	AT	µmol/kg	Huang, Hui	Spectrophotometric
32	Alkalinity, total, standard error	AT std e	±	Huang, Hui	Spectrophotometric
33	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Huang, Hui	Calculated using CO2SYS
34	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Huang, Hui	Calculated using CO2SYS
35	Aragonite saturation state	Omega Arg		Huang, Hui	Calculated using CO2SYS
36	Aragonite saturation state, standard error	Omega Arg std e	±	Huang, Hui	Calculated using CO2SYS
37	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
41	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
43	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

880 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 Treat	6 Repl	7 Survival [%]	8 Settlem [%]	9 symbiont/larv [#/#] (per larvae)	10 Chl a/larv [ng/#]	11 PN O2/ind [nmol/#/min] (per larvae)	12 Resp O2/ind [nmol/#/min] (light-enhanced, per larvae)	13 PG O2/ind [nmol/#/min] (per larvae)	14 Resp O2/ind [nmol/#/min] (dark, per larvae)	15 PN/DR	16 Chl a/cell [pg/#] (per symbiodiniaceae cell)	17 PN O2/ind [nmol/#/min] (per symbiodiniaceae cell)	18 Resp O2/ind [nmol/#/min] (light-enhanced, per symbiodin...)	19 PG O2/ind [nmol/#/min] (per symbiodiniaceae cell)	20 Fv/Fm	21 C/N	22 Time point	23 APE [%] (13C of larvae)	24 APE [%] (15N of larvae)	25 pHT (Potentiometric titration)	26 pH std e [±] (total scale, Potentiometric t...)	27 Sal	28 Sal std e [±]	29 Temp [°C]	30 T std e [±]	31 AT [µmol/kg] (Spectrophotometric)	32 AT std e [±] (Spectrophotometric)	33 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	34 pCO2water_SST_wet std e [±] (Calculated using CO2SYS)	35 Omega Arg (Calculated using CO2SYS)	36 Omega Arg std e [±] (Calculated using CO2SYS)	37 CSC flag (Calculated using seacarb afte...)	38 CO2 [µmol/kg] (Calculated using seacarb afte...)	39 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	40 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	41 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	42 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	43 DIC [µmol/kg] (Calculated using seacarb afte...)	44 Omega Arg (Calculated using seacarb afte...)	45 Omega Cal (Calculated using seacarb afte...)
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	1	100.00	75.0	7375.00	4.27	0.098620	0.149297	0.247917	0.116302	0.847962	104.289	0.0004012	0.0006073	0.0008743	0.666	17.3604416	Pulse	0.0214853	0.1997782	8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	2	100.00	87.5	9625.00	5.87	0.066719	0.076198	0.142917	0.084766	0.787097	109.726	0.0002080	0.0002375	0.0004722	0.622	17.5863106	Pulse	0.0227927	0.1745703	8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	3	93.33	75.0	9698.28	6.11	0.048087	0.113712	0.161800	0.090599	0.530771	109.609	0.0001438	0.0003400	0.0004240	0.654	17.5271160				8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	4	96.67	62.5	7076.61	4.94	0.063155	0.081326	0.144481	0.097526	0.647573	129.939	0.0002767	0.0003563	0.0006901	0.716	17.6705560				8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	5	90.00	87.5																	8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Control	6	93.33	50.0																	8.13	0.003	32.02	0.02	29.25	0.01	2170	25	465	18	3.08	0.04	8	7.72	297.10	298.00	1561.51	247.76	1816.99	4.10	6.17
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	1	90.00	75.0	20625.00	7.16	0.065990	0.136901	0.202891	0.162057	0.407199	62.478	0.0000960	0.0001991	0.0003317	0.705	15.3801774	Pulse	0.0472448	0.4357656	7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	2	93.33	62.5	16875.00	7.80	0.140729	0.237161	0.377891	0.152943	0.920143	83.252	0.0002502	0.0004216	0.0005221	0.608	18.1662618	Pulse	0.0409206	0.4327372	7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	3	93.33	62.5	5937.50	3.53	0.083125	0.176641	0.259766	0.140729	0.590674	107.072	0.0004200	0.0008925	0.0011311	0.604	16.8367792				7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	4	100.00	62.5	9977.68	5.82	0.173633	0.149609	0.323242	0.133620	1.299454	97.978	0.0004873	0.0004198	0.0008890	0.663	15.6319033				7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	5	0.00	50.0																	7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High pCO2	6	0.00	75.0																	7.84	0.005	31.96	0.01	28.90	0.01	2158	26	1012	42	1.74	0.03	8	17.51	667.97	670.01	1803.60	144.71	1965.83	2.39	3.60
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	1	100.00	75.0	13687.50	8.30	0.090599	0.149479	0.240078	0.069089	1.311346	109.133	0.0001986	0.0003276	0.0003500	0.592	18.0074504	Pulse	0.0298580	0.2515918	8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	2	85.00	87.5	5431.03	6.10	0.120859	0.158411	0.279271	0.119370	1.012480	98.634	0.0003259	0.0004272	0.0006371	0.597	21.1379672	Pulse	0.0274608	0.3284503	8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	3	100.00	100.0	6788.79	5.91	0.120878	0.137096	0.257974	0.084766	1.426029	151.555	0.0005164	0.0005856	0.0008909	0.499	17.3582141				8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	4	100.00	75.0	12000.00	6.84	0.142188	0.171901	0.314089	0.113385	1.254019	102.546	0.0003555	0.0004298	0.0006389	0.654	18.5172228				8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	5	0.00	62.5																	8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	High temperature	6	0.00	87.5																	8.16	0.004	31.89	0.02	32.24	0.01	2167	21	437	16	3.52	0.03	8	6.50	267.41	268.20	1480.65	279.26	1766.42	4.71	7.03
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	1	100.00	62.5	6982.76	4.97	0.149165	0.141999	0.291164	0.140729	1.059943	123.847	0.0006195	0.0005897	0.0012241	0.621	23.8259712	Pulse	0.0362138	0.5289781	7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	2	100.00	75.0	6562.50	4.04	0.233516	0.108464	0.341979	0.117031	1.995327	110.945	0.0010675	0.0004958	0.0016025	0.586	20.4205040	Pulse	0.0326561	0.5268487	7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	3	90.00	75.0	7562.50	4.33	0.164609	0.123047	0.287656	0.098790	1.666250	103.056	0.0006530	0.0004881	0.0010580	0.610	18.7003684				7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	4	95.73	75.0	9625.00	4.92	0.158776	0.106094	0.264870	0.153125	1.036905	91.988	0.0004949	0.0003307	0.0009562	0.625	20.0878426				7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	5	0.00	87.5																	7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28
laboratory	Pocillopora damicornis	marinespecies.org	urn:lsid:marinespecies.org:taxname:206953	Combined	6	0.00	62.5																	7.87	0.004	31.95	0.02	31.86	0.01	2197	18	966	35	2.10	0.04	8	15.34	625.98	627.83	1781.73	170.28	1967.35	2.86	4.28