Citation:

PANGAEA.973114 (DOI registration in progress)

Name: Seawater carbonate chemistry and seagrass-oyster interactions in response to ocean warming and acidification
Published: 2024
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea virginica; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Plantae; Seagrass; Single species; Species interaction; Temperate; Temperature; Tracheophyta; Zostera marina

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Abstract:

Here, we investigate how reciprocal interactions between two coastal foundation species, the eastern oyster (Crassostrea virginica) and eelgrass (Zostera marina) shift in sign and magnitude in response to ocean warming (+1.5°C) and acidification (−0.4 pH) via a manipulative co-culture experiment in mesocosms.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad Digital Repository (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-10-18.

Keyword(s):

Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea virginica; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Plantae; Seagrass; Single species; Species interaction; Temperate; Temperature; Tracheophyta; Zostera marina

Related to:

DuBois, Katherine; Baumann, Justin H; Charles, Eban J; Ralph, Fiona G; Carlon, David B (2024): Data from: Shifting seagrass-oyster interactions alter species response to ocean warming and acidification [dataset]. Dryad, https://doi.org/10.5061/DRYAD.GB5MKKX09

DuBois, Katherine; Baumann, Justin H; Charles, Eban J; Ralph, Fiona G; Carlon, David B (2024): Shifting seagrass‐oyster interactions alter species response to ocean warming and acidification. Journal of Ecology, 1365-2745.14406, https://doi.org/10.1111/1365-2745.14406

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 43.792639 * Longitude: -69.954111

Date/Time Start: 2021-06-27T00:00:00 * Date/Time End: 2021-06-27T00:00:00

Event(s):

Brewer_Cove * Latitude: 43.792639 * Longitude: -69.954111 * Date/Time: 2021-06-27T00:00:00 * Method/Device: Experiment (EXP)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		DuBois, Katherine
2	Type of study	Study type		DuBois, Katherine
3	Species, unique identification	Species UID		DuBois, Katherine
4	Species, unique identification (URI)	Species UID (URI)		DuBois, Katherine
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		DuBois, Katherine
6	Identification	ID		DuBois, Katherine		Bucket
7	Treatment	Treat		DuBois, Katherine
8	Condition	Cond		DuBois, Katherine		Seagrass*_oyster (coculture) or seagrass (monoculture) or oyster (monoculture)
9	Identification	ID		DuBois, Katherine		Shoot
10	Type	Type		DuBois, Katherine		Tissue, above (leaves) or below (roots and rhizomes)
11	Dry mass	Dry m	g	DuBois, Katherine		each tissue
12	Identification	ID		DuBois, Katherine		Tray
13	Shoots	Shoots	#	DuBois, Katherine
14	Growth	Growth	mm	DuBois, Katherine		distance between punch mark, leaf 1
15	Growth	Growth	mm	DuBois, Katherine		distance between punch mark, leaf 2
16	Growth	Growth	mm	DuBois, Katherine		distance between punch mark, leaf 3
17	Growth	Growth	mm	DuBois, Katherine		distance between punch mark, leaf 4
18	Length	l	cm	DuBois, Katherine		Total rhizome length of tagged subreplicate shoot
19	Time in days	Time	days	DuBois, Katherine		between marking and measurement
20	Growth rate	µ	cm/day	DuBois, Katherine
21	Identification	ID		DuBois, Katherine		ID
22	Side	Side		DuBois, Katherine		Plate
23	Replicate	Repl		DuBois, Katherine		Oyster
24	Mass	Mass	g	DuBois, Katherine		Vial
25	Length	l	mm	DuBois, Katherine
26	Width	w	mm	DuBois, Katherine
27	Height	h	mm	DuBois, Katherine
28	Wet mass	Wet m	g	DuBois, Katherine		shell, after shucking
29	Wet mass	Wet m	g	DuBois, Katherine		wet body tissue mass in vial
30	Dry mass	Dry m	g	DuBois, Katherine		shell
31	Dry mass	Dry m	g	DuBois, Katherine		dry body tissue mass in vial
32	Wet mass	Wet m	g	DuBois, Katherine		calculated wet mass of tissue after vial weight subtraction
33	Dry mass	Dry m	g	DuBois, Katherine		calculated dry mass of tissue after vial weight subtraction
34	Comment	Comment		DuBois, Katherine		Was oyster tissue used for isotope analyses
35	Mortality	Mortality		DuBois, Katherine		did oyster die during the experiment? 1 - dead, 0- alive
36	Plate	Plate		DuBois, Katherine
37	Replication	Repl		DuBois, Katherine		Oyster replication (1-6) ID on plate
38	Area	Area	cm²	DuBois, Katherine		Initial oyster area measure in ImageJ replicate 1
39	Area	Area	cm²	DuBois, Katherine		Initial oyster area measure in ImageJ replicate 2
40	Area	Area	cm²	DuBois, Katherine		Initial oyster area measure in ImageJ replicate 3
41	Area	Area	cm²	DuBois, Katherine		Average of three initial area measurements for each oyster
42	Area	Area	cm²	DuBois, Katherine		Final oyster area measure in ImageJ replicate 1
43	Area	Area	cm²	DuBois, Katherine		Final oyster area measure in ImageJ replicate 2
44	Area	Area	cm²	DuBois, Katherine		Final oyster area measure in ImageJ replicate 3
45	Area	Area	cm²	DuBois, Katherine		Average of three final area measurements for each oyster
46	Area	Area	cm²	DuBois, Katherine		growth
47	Identification	ID		DuBois, Katherine		Header
48	Temperature, water	Temp	°C	DuBois, Katherine
49	Salinity	Sal		DuBois, Katherine
50	Alkalinity, total	AT	µmol/kg	DuBois, Katherine
51	pH, total scale	pHT		DuBois, Katherine		in situ, total scale
52	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
53	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
55	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
56	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
58	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
59	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

34657 data points

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