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Rico, Milagros; Santiago-Díaz, Paula; Samperio-Ramos, Guillermo; González-Dávila, Melchor; Santana-Casiano, Juana Magdalena (2024): Seawater carbonate chemistry and polyphenols and carbohydrates of Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.973252

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Abstract:
Cultures of the coccolithophore Emiliania huxleyi were grown under four different CO2-controlled pH conditions (7.75, 7.90, 8.10, and 8.25) to explore variations in extra- and intracellular polyphenols and carbohydrates in response to different ocean acidification scenarios.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-01.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chromista; Emiliania huxleyi; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Other studied parameter or process; Pelagos; Phytoplankton; Single species
Related to:
Rico, Milagros; Santiago-Díaz, Paula; Samperio-Ramos, Guillermo; González-Dávila, Melchor; Santana-Casiano, Juana Magdalena (2024): Variations of polyphenols and carbohydrates of Emiliania huxleyi grown under simulated ocean acidification conditions. Biogeosciences, 21(19), 4381-4394, https://doi.org/10.5194/bg-21-4381-2024
Samperio-Ramos, Guillermo; Santana-Casiano, Juana Magdalena; González-Dávila, Melchor; Ferreira, Sonia; Coimbra, Manuel A (2017): Seawater carbonate chemistry and the organic ligands released by Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.891195
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeRico, Milagros
2Species, unique identificationSpecies UIDRico, Milagros
3Species, unique identification (URI)Species UID (URI)Rico, Milagros
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Rico, Milagros
5TreatmentTreatRico, Milagros
6CompoundsCompRico, MilagrosPhenolic
7Phenolic compound, intracellular, per cellPhC in/cellamol/#Rico, Milagros
8Phenolic compound, intracellular, per cell, standard deviationPhC in/cell std dev±Rico, Milagros
9Phenolic compound, exuded, per cellPhC ex/cellamol/#Rico, Milagros
10Phenolic compound, exuded, per cell, standard deviationPhC ex/cell std dev±Rico, Milagros
11Phenolic compound, exudedPhC exnmol/lRico, Milagros
12Phenolic compound, exuded, standard deviationPhC ex std dev±Rico, Milagros
13Carbohydrates, intracellular, per cellCHO in/cellfmol/#Rico, Milagros
14Carbohydrates, intracellular, per cell, standard deviationCHO in/cell std dev±Rico, Milagros
15Carbohydrates, extracellular, per cellCHO ex/cellfmol/#Rico, Milagros
16Carbohydrates, extracellular, per cell, standard deviationCHO ex/cell std dev±Rico, Milagros
17Ferric-reducing antioxidant powerFRAPfmol/#Rico, Milagros
18Ferric-reducing antioxidant power, standard deviationFRAP std dev±Rico, Milagros
19Radical scavenging activity, per cellRSA/cellfmol/#Rico, Milagros
20Radical scavenging activity, per cell, standard deviationRSA/cell std dev±Rico, Milagros
21Radical scavenging activity, exudatesRSA exnmol/lRico, Milagros
22Radical scavenging activity, exudates, standard deviationRSA ex std dev±Rico, Milagros
23Temperature, waterTemp°CRico, Milagros
24SalinitySalRico, Milagros
25Alkalinity, totalATµmol/kgRico, Milagrosday 0
26Alkalinity, total, standard deviationAT std dev±Rico, Milagrosday 0
27Carbon, inorganic, dissolvedDICµmol/kgRico, Milagrosday 0
28Carbon, inorganic, dissolved, standard deviationDIC std dev±Rico, Milagrosday 0
29Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmRico, Milagrosday 0
30Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Rico, Milagrosday 0
31Alkalinity, totalATµmol/kgRico, Milagrosday 8
32Alkalinity, total, standard deviationAT std dev±Rico, Milagrosday 8
33Carbon, inorganic, dissolvedDICµmol/kgRico, Milagrosday 8
34Carbon, inorganic, dissolved, standard deviationDIC std dev±Rico, Milagrosday 8
35Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmRico, Milagrosday 8
36Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Rico, Milagrosday 8
37Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale, day 0
39Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
40Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
41Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
42Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
43Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
44Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
45Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
46pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale, day 8
47Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
48Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
50Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
51Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
52Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
53Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
1226 data points

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