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Rico, Milagros; Santiago-Díaz, Paula; Samperio-Ramos, Guillermo; González-Dávila, Melchor; Santana-Casiano, Juana Magdalena (2024): Seawater carbonate chemistry and polyphenols and carbohydrates of Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.973252

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Abstract:
Cultures of the coccolithophore Emiliania huxleyi were grown under four different CO2-controlled pH conditions (7.75, 7.90, 8.10, and 8.25) to explore variations in extra- and intracellular polyphenols and carbohydrates in response to different ocean acidification scenarios.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-01.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chromista; Emiliania huxleyi; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Other studied parameter or process; Pelagos; Phytoplankton; Single species
Related to:
Rico, Milagros; Santiago-Díaz, Paula; Samperio-Ramos, Guillermo; González-Dávila, Melchor; Santana-Casiano, Juana Magdalena (2024): Variations of polyphenols and carbohydrates of Emiliania huxleyi grown under simulated ocean acidification conditions. Biogeosciences, 21(19), 4381-4394, https://doi.org/10.5194/bg-21-4381-2024
Samperio-Ramos, Guillermo; Santana-Casiano, Juana Magdalena; González-Dávila, Melchor; Ferreira, Sonia; Coimbra, Manuel A (2017): Seawater carbonate chemistry and the organic ligands released by Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.891195
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Type of studyStudy typeRico, Milagros
Species, unique identificationSpecies UIDRico, Milagros
Species, unique identification (URI)Species UID (URI)Rico, Milagros
Species, unique identification (Semantic URI)Species UID (Semantic URI)Rico, Milagros
TreatmentTreatRico, Milagros
CompoundsCompRico, MilagrosPhenolic
Phenolic compound, intracellular, per cellPhC in/cellamol/#Rico, Milagros
Phenolic compound, intracellular, per cell, standard deviationPhC in/cell std dev±Rico, Milagros
Phenolic compound, exuded, per cellPhC ex/cellamol/#Rico, Milagros
10 Phenolic compound, exuded, per cell, standard deviationPhC ex/cell std dev±Rico, Milagros
11 Phenolic compound, exudedPhC exnmol/lRico, Milagros
12 Phenolic compound, exuded, standard deviationPhC ex std dev±Rico, Milagros
13 Carbohydrates, intracellular, per cellCHO in/cellfmol/#Rico, Milagros
14 Carbohydrates, intracellular, per cell, standard deviationCHO in/cell std dev±Rico, Milagros
15 Carbohydrates, extracellular, per cellCHO ex/cellfmol/#Rico, Milagros
16 Carbohydrates, extracellular, per cell, standard deviationCHO ex/cell std dev±Rico, Milagros
17 Ferric-reducing antioxidant powerFRAPfmol/#Rico, Milagros
18 Ferric-reducing antioxidant power, standard deviationFRAP std dev±Rico, Milagros
19 Radical scavenging activity, per cellRSA/cellfmol/#Rico, Milagros
20 Radical scavenging activity, per cell, standard deviationRSA/cell std dev±Rico, Milagros
21 Radical scavenging activity, exudatesRSA exnmol/lRico, Milagros
22 Radical scavenging activity, exudates, standard deviationRSA ex std dev±Rico, Milagros
23 Temperature, waterTemp°CRico, Milagros
24 SalinitySalRico, Milagros
25 Alkalinity, totalATµmol/kgRico, Milagrosday 0
26 Alkalinity, total, standard deviationAT std dev±Rico, Milagrosday 0
27 Carbon, inorganic, dissolvedDICµmol/kgRico, Milagrosday 0
28 Carbon, inorganic, dissolved, standard deviationDIC std dev±Rico, Milagrosday 0
29 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmRico, Milagrosday 0
30 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Rico, Milagrosday 0
31 Alkalinity, totalATµmol/kgRico, Milagrosday 8
32 Alkalinity, total, standard deviationAT std dev±Rico, Milagrosday 8
33 Carbon, inorganic, dissolvedDICµmol/kgRico, Milagrosday 8
34 Carbon, inorganic, dissolved, standard deviationDIC std dev±Rico, Milagrosday 8
35 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmRico, Milagrosday 8
36 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Rico, Milagrosday 8
37 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale, day 0
39 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
40 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
41 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
42 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
43 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
44 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
45 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 0
46 pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale, day 8
47 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
48 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
49 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
50 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
51 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
52 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
53 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)day 8
Size:
1226 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Study type

Species UID

Species UID (URI)

Species UID (Semantic URI)

Treat

Comp
(Phenolic)

PhC in/cell [amol/#]

PhC in/cell std dev [±]

PhC ex/cell [amol/#]
10 
PhC ex/cell std dev [±]
11 
PhC ex [nmol/l]
12 
PhC ex std dev [±]
13 
CHO in/cell [fmol/#]
14 
CHO in/cell std dev [±]
15 
CHO ex/cell [fmol/#]
16 
CHO ex/cell std dev [±]
17 
FRAP [fmol/#]
18 
FRAP std dev [±]
19 
RSA/cell [fmol/#]
20 
RSA/cell std dev [±]
21 
RSA ex [nmol/l]
22 
RSA ex std dev [±]
23 
Temp [°C]
24 
Sal
25 
AT [µmol/kg]
(day 0)
26 
AT std dev [±]
(day 0)
27 
DIC [µmol/kg]
(day 0)
28 
DIC std dev [±]
(day 0)
29 
pCO2water_SST_wet [µatm]
(day 0)
30 
pCO2 std dev [±]
(day 0)
31 
AT [µmol/kg]
(day 8)
32 
AT std dev [±]
(day 8)
33 
DIC [µmol/kg]
(day 8)
34 
DIC std dev [±]
(day 8)
35 
pCO2water_SST_wet [µatm]
(day 8)
36 
pCO2 std dev [±]
(day 8)
37 
CSC flag
38 
pHT
(total scale, day 0)
39 
CO2 [µmol/kg]
(day 0)
40 
fCO2water_SST_wet [µatm]
(day 0)
41 
pCO2water_SST_wet [µatm]
(day 0)
42 
[HCO3]- [µmol/kg]
(day 0)
43 
[CO3]2- [µmol/kg]
(day 0)
44 
Omega Arg
(day 0)
45 
Omega Cal
(day 0)
46 
pHT
(total scale, day 8)
47 
CO2 [µmol/kg]
(day 8)
48 
fCO2water_SST_wet [µatm]
(day 8)
49 
pCO2water_SST_wet [µatm]
(day 8)
50 
[HCO3]- [µmol/kg]
(day 8)
51 
[CO3]2- [µmol/kg]
(day 8)
52 
Omega Arg
(day 8)
53 
Omega Cal
(day 8)
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75gallic acid0.130.0325352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75protocatechuic acid151.012.025352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75epicatechin1.200.1034.01.025352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75vanillic acid6.440.0625352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75p-coumaric acid25352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75rutin1.470.0012.10.425352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.75Sum9.240.19197.112.318.00.925352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9gallic acid2535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9protocatechuic acid0.160.0134.02.02535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9epicatechin40.05.02535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9vanillic acid2.500.102535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9p-coumaric acid2535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9rutin20.02.02535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.9Sum2.660.1194.09.09.60.82535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1gallic acid0.250.07253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1protocatechuic acid26.30.2253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1epicatechin70.02.0253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1vanillic acid2.300.05253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1p-coumaric acid1.400.20253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1rutin13.20.3253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.1Sum3.950.32109.52.511.70.3253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25gallic acid45.00.0253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25protocatechuic acid298.022.0253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25epicatechin77.06.0253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25vanillic acid2.500.20253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25p-coumaric acid253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25rutin11.20.8253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.25Sum2.500.20431.228.843.03.0253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.2527.02.244.432.989.50.63.40.226.01.0253523761223352519052618696122512214157.4555.401951.341957.602212.3967.201.071.6210.230.000.020.0211.60213.403.395.14
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 8.130.43.245.744.939.30.32.30.337.02.0253523801523292820122819714435323495157.4851.681820.331826.172205.7171.611.141.7210.170.000.040.0420.97332.035.277.99
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.930.33.747.397.369.30.76.00.240.02.02535239017234740212947208536616125998157.4554.971936.181942.392223.6168.421.091.659.930.000.170.1760.01555.998.8213.39
laboratoryEmiliania huxleyimarinespecies.orgurn:lsid:marinespecies.org:taxname:115104pH 7.7523.81.946.953.9210.20.58.10.126.10.425352401142365262215162178399141892527157.4358.072045.292051.852241.1465.791.041.589.500.051.641.65207.98705.9811.2017.00