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Sordo, Laura; Esteves, Eduardo; Valente, Joana F A; Aníbal, Jaime; Duarte, Catarina; Alves, Nuno; Baptista, Teresa; Gaspar, Miguel B (2024): Seawater carbonate chemistry and shell strength of juveniles of the commercial clam species Chamelea gallina [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.972715

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Published: 2024-09-24 • DOI registered: 2024-10-24

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Abstract:
The objectives of the present study were to assess the long-term effect of increasing pCO2 after 217 days of exposure under controlled conditions of pH of ~8.2, 8.0, and 7.7 on the strength and integrity of shells of juveniles of the commercial striped venus clam Chamelea gallina. Shell strength was estimated through compression tests and integrity through scanning electron microscopy (SEM) and dispersive X-ray analyses (EDX).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-09-23.
Keyword(s):
Animalia; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Chamelea gallina; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Laboratory strains; Mollusca; Not applicable; Ocean acidification; Other studied parameter or process; Single species
Related to:
Sordo, Laura; Esteves, Eduardo; Valente, Joana F A; Aníbal, Jaime; Duarte, Catarina; Alves, Nuno; Baptista, Teresa; Gaspar, Miguel B (2024): Ocean acidification will not affect the shell strength of juveniles of the commercial clam species Chamelea gallina: Implications of the local alkalinization of seawater. Marine Environmental Research, 202, 106746, https://doi.org/10.1016/j.marenvres.2024.106746
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSordo, Laura
2Species, unique identificationSpecies UIDSordo, Laura
3Species, unique identification (URI)Species UID (URI)Sordo, Laura
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Sordo, Laura
5Sample IDSample IDSordo, Laura
6TreatmentTreatSordo, Laura
7MassMassmgSordo, Laurashell, air dried
8LengthlmmSordo, Laura
9WidthwmmSordo, Laura
10ThicknessThickmmSordo, Laura
11DistanceDistmmSordo, Laura
12StrengthStrengthNSordo, Laura
13CarbonC%Sordo, LauraVentral margin-Mass norml
14CalciumCa%Sordo, LauraVentral margin-Mass norml
15Calcium/Carbon ratioCa/CSordo, LauraVentral margin-Mass norml
16CarbonC%Sordo, LauraCentral area-Mass norml
17CalciumCa%Sordo, LauraCentral area-Mass norml
18Calcium/Carbon ratioCa/CSordo, LauraCentral area-Mass norml
19Individual IDInd IDSordo, Laura
20MassMassmgSordo, LauraConteiner
21MassMassmgSordo, LauraShell
22MassMassmgSordo, LauraCont.+shell air dried, 13/10/20
23MassMassmgSordo, LauraCont+ shell DW, After 24h for 80°
24MassMassmgSordo, LauraConteiner+Ashes, After 24 h 450°
25MassMassmgSordo, LauraShell dried weight
26Organic matterOMgSordo, Laura
27SalinitySalSordo, Laura
28Salinity, standard errorSal std e±Sordo, Laura
29Temperature, waterTemp°CSordo, Laura
30Temperature, water, standard errorT std e±Sordo, Laura
31pH, NBS scalepH NBSSordo, LauraPotentiometricNBS scale
32pH, standard errorpH std e±Sordo, LauraPotentiometricNBS scale
33Alkalinity, totalATµmol/kgSordo, LauraPotentiometric titration
34Alkalinity, total, standard errorAT std e±Sordo, LauraPotentiometric titration
35Bicarbonate ion[HCO3]-µmol/kgSordo, LauraCalculated using CO2SYS
36Bicarbonate, standard error[HCO3]- std e±Sordo, LauraCalculated using CO2SYS
37Carbonate ion[CO3]2-µmol/kgSordo, LauraCalculated using CO2SYS
38Carbonate ion, standard error[CO3]2- std e±Sordo, LauraCalculated using CO2SYS
39Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSordo, LauraCalculated using CO2SYS
40Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Sordo, LauraCalculated using CO2SYS
41Aragonite saturation stateOmega ArgSordo, LauraCalculated using CO2SYS
42Aragonite saturation state, standard errorOmega Arg std e±Sordo, LauraCalculated using CO2SYS
43Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
45Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
8832 data points

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