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Gurr, Samuel J; Meseck, Shannon; Bernatchez, Genevieve; Redman, Dylan H; Dixon, Mark S; Guy, Lisa; MacDonald, Aaron; Stiles, Sheila; McFarland, Katherine (2025): Seawater carbonate chemistry and shell growth, survival and respiration of Eastern oyster larvae (Crassostrea virginica) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.977818

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Published: 2025-03-05 • DOI registered: 2025-04-03

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Abstract:
We exposed Eastern oyster larvae (Crassostrea virginica) to a full-factorial experimental design using two temperatures (23°C and 27°C), salinities (17 and 27), and pCO2 levels (~700 μatm and 1850 μatm pCO2), resulting in Ωar conditions 0.3–1.7. Ωar reduced by low salinity, elevated pCO2, and low temperature.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from NOAA National Centers for Environmental Information (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-03-05.
Keyword(s):
Animalia; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea virginica; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Pelagos; Respiration; Salinity; Single species; Temperate; Temperature; Zooplankton
Related to:
Gurr, Samuel J; Meseck, Shannon; Bernatchez, Genevieve; Redman, Dylan H; Dixon, Mark S; Guy, Lisa; MacDonald, Aaron; Stiles, Sheila; McFarland, Katherine (2025): Transcriptome‐To‐Phenome Response of Larval Eastern Oysters Under Multiple Drivers of Aragonite Undersaturation. Ecology and Evolution, 15(2), e70953, https://doi.org/10.1002/ece3.70953
Source:
Gurr, Samuel J; Meseck, Shannon; McFarland, Katherine (2025): Eastern oyster larva exposed to mutliple drivers of aragonite undersaturation from 2021-04-29 to 2021-05-21 (NCEI Accession 0300468) [dataset]. NOAA National Centers for Environmental Information, https://doi.org/10.25921/2YCY-7409
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 41.324800 * Longitude: -71.985400
Date/Time Start: 2021-04-29T00:00:00 * Date/Time End: 2021-05-21T00:00:00
Event(s):
Milford_OA * Latitude: 41.324800 * Longitude: -71.985400 * Date/Time Start: 2021-04-29T00:00:00 * Date/Time End: 2021-05-21T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGurr, Samuel J
2Species, unique identificationSpecies UIDGurr, Samuel J
3Species, unique identification (URI)Species UID (URI)Gurr, Samuel J
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Gurr, Samuel J
5DateDateGurr, Samuel J
6IdentificationIDGurr, Samuel JBucket
7SalinitySalGurr, Samuel J
8Temperature, waterTemp°CGurr, Samuel JTemperature of the buckets in the water table with the oyster larvae
9Alkalinity, totalATµmol/kgGurr, Samuel JPotentiometric titration
10Temperature, waterTemp°CGurr, Samuel JTemperature of the sample when the pH was being measured
11pH, total scalepHTGurr, Samuel JSpectrophotometric
12LengthlµmGurr, Samuel JLarvae
13LengthlµmGurr, Samuel JJuvenile
14SurvivalSurvival%Gurr, Samuel J
15Respiration rate, oxygen, per individualResp O2/indmg/#/hGurr, Samuel J
16Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
17pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
18Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
19Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
20Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
21Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
5251 data points

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