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Miller, A Whitman; Reynolds, Amanda C; Sobrino, Cristina; Riedel, Gerhardt F (2024): Seawater carbonate chemistry and oyster larvae shell area [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.967546

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Abstract:
To address CO2-induced changes to estuarine calcification, veliger larvae of two oyster species, the Eastern oyster (Crassostrea virginica), and the Suminoe oyster (Crassostrea ariakensis) were grown in estuarine water under four pCO2 regimes, 280, 380, 560 and 800 matm, to simulate atmospheric conditions in the pre-industrial era, present, and projected future concentrations in 50 and 100 years respectively. CO2 manipulations were made using an automated negative feedback control system that allowed continuous and precise control over the pCO2 in experimental aquaria. Larval growth was measured using image analysis, and calcification was measured by chemical analysis of calcium in their shells.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-30.
Keyword(s):
Animalia; Bottles or small containers/Aquaria (<20 L); Crassostrea ariakensis; Crassostrea virginica; Growth/Morphology; Laboratory experiment; Laboratory strains; Mollusca; Not applicable; Pelagos; Single species; Zooplankton
Related to:
Miller, A Whitman; Reynolds, Amanda C; Sobrino, Cristina; Riedel, Gerhardt F; Finkel, Zoe (2009): Shellfish Face Uncertain Future in High CO2 World: Influence of Acidification on Oyster Larvae Calcification and Growth in Estuaries. PLoS ONE, 4(5), e5661, https://doi.org/10.1371/journal.pone.0005661
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeMiller, A Whitman
2Species, unique identificationSpecies UIDMiller, A Whitman
3Species, unique identification (Semantic URI)Species UID (Semantic URI)Miller, A Whitman
4Species, unique identification (URI)Species UID (URI)Miller, A Whitman
5Treatment: partial pressure of carbon dioxideT:pCO2µatmMiller, A Whitman
6ReplicateReplMiller, A Whitman
7Shell surface areaShell SAµm2Miller, A Whitman
8Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmMiller, A WhitmanCalculated using CO2SYS
9Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Miller, A WhitmanCalculated using CO2SYS
10pHpHMiller, A WhitmanNBS scale
11pH, standard errorpH std e±Miller, A Whitman
12Alkalinity, totalATµmol/kgMiller, A WhitmanCalculated using CO2SYS
13Alkalinity, total, standard errorAT std e±Miller, A WhitmanCalculated using CO2SYS
14Carbon, inorganic, dissolvedDICµmol/kgMiller, A Whitman
15Carbon, inorganic, dissolved, standard errorDIC std e±Miller, A Whitman
16Carbon dioxideCO2µmol/kgMiller, A Whitman
17Carbon dioxide, standard errorCO2 std e±Miller, A Whitman
18Bicarbonate ion[HCO3]-µmol/kgMiller, A Whitman
19Bicarbonate ion, standard error[HCO3]- std e±Miller, A Whitman
20Carbonate ion[CO3]2-µmol/kgMiller, A Whitman
21Carbonate ion, standard error[CO3]2- std e±Miller, A Whitman
22Aragonite saturation stateOmega ArgMiller, A Whitman
23Aragonite saturation state, standard errorOmega Arg std e±Miller, A Whitman
24SalinitySalMiller, A Whitman
25Salinity, standard errorSal std e±Miller, A Whitman
26Experiment durationExp durationdaysMiller, A Whitman
27Temperature, waterTemp°CMiller, A Whitman
28Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
30Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
172130 data points

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