Citation:

PANGAEA.967546

Name: Seawater carbonate chemistry and oyster larvae shell area
Published: 2024-04-30
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Bottles or small containers/Aquaria (<20 L); Crassostrea ariakensis; Crassostrea virginica; Growth/Morphology; Laboratory experiment; Laboratory strains; Mollusca; Not applicable; Pelagos; Single species; Zooplankton

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Abstract:

To address CO2-induced changes to estuarine calcification, veliger larvae of two oyster species, the Eastern oyster (Crassostrea virginica), and the Suminoe oyster (Crassostrea ariakensis) were grown in estuarine water under four pCO2 regimes, 280, 380, 560 and 800 matm, to simulate atmospheric conditions in the pre-industrial era, present, and projected future concentrations in 50 and 100 years respectively. CO2 manipulations were made using an automated negative feedback control system that allowed continuous and precise control over the pCO2 in experimental aquaria. Larval growth was measured using image analysis, and calcification was measured by chemical analysis of calcium in their shells.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-30.

Keyword(s):

Animalia; Bottles or small containers/Aquaria (<20 L); Crassostrea ariakensis; Crassostrea virginica; Growth/Morphology; Laboratory experiment; Laboratory strains; Mollusca; Not applicable; Pelagos; Single species; Zooplankton

Related to:

Miller, A Whitman; Reynolds, Amanda C; Sobrino, Cristina; Riedel, Gerhardt F; Finkel, Zoe (2009): Shellfish Face Uncertain Future in High CO2 World: Influence of Acidification on Oyster Larvae Calcification and Growth in Estuaries. PLoS ONE, 4(5), e5661, https://doi.org/10.1371/journal.pone.0005661

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Miller, A Whitman
2	Species, unique identification	Species UID		Miller, A Whitman
3	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Miller, A Whitman
4	Species, unique identification (URI)	Species UID (URI)		Miller, A Whitman
5	Treatment: partial pressure of carbon dioxide	T:pCO2	µatm	Miller, A Whitman
6	Replicate	Repl		Miller, A Whitman
7	Shell surface area	Shell SA	µm²	Miller, A Whitman
8	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Miller, A Whitman	Calculated using CO2SYS
9	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Miller, A Whitman	Calculated using CO2SYS
10	pH	pH		Miller, A Whitman		NBS scale
11	pH, standard error	pH std e	±	Miller, A Whitman
12	Alkalinity, total	AT	µmol/kg	Miller, A Whitman	Calculated using CO2SYS
13	Alkalinity, total, standard error	AT std e	±	Miller, A Whitman	Calculated using CO2SYS
14	Carbon, inorganic, dissolved	DIC	µmol/kg	Miller, A Whitman
15	Carbon, inorganic, dissolved, standard error	DIC std e	±	Miller, A Whitman
16	Carbon dioxide	CO2	µmol/kg	Miller, A Whitman
17	Carbon dioxide, standard error	CO2 std e	±	Miller, A Whitman
18	Bicarbonate ion	[HCO3]-	µmol/kg	Miller, A Whitman
19	Bicarbonate ion, standard error	[HCO3]- std e	±	Miller, A Whitman
20	Carbonate ion	[CO3]2-	µmol/kg	Miller, A Whitman
21	Carbonate ion, standard error	[CO3]2- std e	±	Miller, A Whitman
22	Aragonite saturation state	Omega Arg		Miller, A Whitman
23	Aragonite saturation state, standard error	Omega Arg std e	±	Miller, A Whitman
24	Salinity	Sal		Miller, A Whitman
25	Salinity, standard error	Sal std e	±	Miller, A Whitman
26	Experiment duration	Exp duration	days	Miller, A Whitman
27	Temperature, water	Temp	°C	Miller, A Whitman
28	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
30	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

172130 data points

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