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Tomasetti, Stephen J; Doall, Michael H; Hallinan, Brendan D.; Kraemer, Jeffrey R; Gobler, Christopher J (2024): Seawater carbonate chemistry and characterization of oyster growth and calcification on constructed oyster reefs [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.967511

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Abstract:
This study, therefore, sought to (1) characterize the baseline pH/DO variability as well as the associated drivers of the carbonate system in constructed reefs to (2) determine the reefs' influence on the biogeochemistry of the overlying waters and (3) evaluate the impacts, if any, on resident oysters, particularly in environments already prone to coastal acidification. To do this, we conducted a 4-year study (2018–2021) of multiple constructed subtidal oyster reefs in Shinnecock Bay, NY USA. We monitored the growth of three oyster reefs over four consecutive years and established high frequency time series of pHNBS, DO, and other relevant environmental parameters in both regional ambient seawater and reef-modified seawater during the summer months (when coastal acidification is most prevalent and oyster growth is maximal) over two of the four years. During one year, these data were paired with weekly surveys characterizing habitat macroalgae abundance and with biweekly sampling of reef and control seawater for discrete measurements of DIC, TA, and chlorophyll a. Finally, two in situ oyster experiments were conducted during the summers of two separate years to evaluate the impact of reef-modified seawater conditions versus ambient seawater conditions on juvenile oyster growth and survival.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Dryad (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-28.
Keyword(s):
Animalia; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Coast and continental shelf; Crassostrea virginica; Entire community; Field experiment; Field observation; Growth/Morphology; Mollusca; North Atlantic; Rocky-shore community; Single species; Temperate
Related to:
Tomasetti, Stephen J; Doall, Michael H; Hallinan, Brendan D.; Kraemer, Jeffrey R; Gobler, Christopher J (2023): Oyster reefs' control of carbonate chemistry—Implications for oyster reef restoration in estuaries subject to coastal ocean acidification. Global Change Biology, 29(23), 6572-6590, https://doi.org/10.1111/gcb.16960
Source:
Tomasetti, Stephen J (2023): Monitoring data for oyster reefs and nearby controls, including high frequency environmental parameters, carbonate chemistry, oyster growth, and other data. Dryad, https://doi.org/10.5061/DRYAD.37PVMCVRQ
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeTomasetti, Stephen J
2SiteSiteTomasetti, Stephen J
3IdentificationIDTomasetti, Stephen Jbag
4Shell heightShell hmmTomasetti, Stephen J2020
5Shell heightShell hmmTomasetti, Stephen J2021
6Shell, massShell mgTomasetti, Stephen J2020
7Shell, massShell mgTomasetti, Stephen J2021
8Shell growthShell growthgTomasetti, Stephen J2021
9Calcium carbonate, massCaCO3gTomasetti, Stephen J2021
10Abundance per areaAbund a#/m2Tomasetti, Stephen JOyster
11Calcification rateCalc rateg/m2/aTomasetti, Stephen J
12Year of samplingYear samplTomasetti, Stephen J
13Growth rateµmm/aTomasetti, Stephen J
14DateDateTomasetti, Stephen J
15Shell heightShell hmmTomasetti, Stephen J
16AgeAgeaTomasetti, Stephen J
17Shell heightShell hmmTomasetti, Stephen J
18Shell, massShell mgTomasetti, Stephen J
19HeighthmmTomasetti, Stephen JJuvenile oyster
20IdentificationIDTomasetti, Stephen Jtray
21Chlorophyll aChl aµg/lTomasetti, Stephen J
22CoverageCov%Tomasetti, Stephen Jmacroalgae
23IdentificationIDTomasetti, Stephen Jquadrat
24Date/time startDate/time startTomasetti, Stephen J
25Date/time endDate/time endTomasetti, Stephen J
26Alkalinity, totalATµmol/kgTomasetti, Stephen J
27Carbon, inorganic, dissolvedDICµmol/kgTomasetti, Stephen J
28SalinitySalTomasetti, Stephen J
29Temperature, waterTemp°CTomasetti, Stephen J
30Oxygen saturationO2 sat%Tomasetti, Stephen J
31Oxygen, dissolvedDOmg/lTomasetti, Stephen J
32Oxygen, apparent utilizationAOUµmol/kgTomasetti, Stephen J
33Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
35Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
15571 data points

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