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Steeves, Laura; Honecker, Molly; Meseck, Shannon; Munroe, Daphne (2024): Seawater carbonate chemistry and physiology and growth of the Atlantic Surfclam (Spisula solidissima) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.968465

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Abstract:
This study examines the physiological response of the Atlantic surfclam (Spisula solidissima) to ocean acidification in warm summer temperatures. Working with ambient seawater, this experiment manipulated pH conditions while maintaining natural diel fluctuations and seasonal shifts in temperature. One-year-old surfclams were exposed to one of three pH conditions (ambient (control): 7.8 ± 0.07, medium: 7.51 ± 0.10, or low: 7.20 ± 0.10) in flow-through conditions for six weeks, and feeding and digestive physiology was measured after one day, two weeks, and six weeks.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-16.
Keyword(s):
Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; North Atlantic; Other studied parameter or process; Single species; Spisula solidissima; Temperate; Temperature
Related to:
Steeves, Laura; Honecker, Molly; Meseck, Shannon; Munroe, Daphne (2024): Effects of Ocean Acidification and Summer Thermal Stress on the Physiology and Growth of the Atlantic Surfclam (Spisula solidissima). Journal of Marine Science and Engineering, 12(4), 673, https://doi.org/10.3390/jmse12040673
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSteeves, Laura
2Species, unique identificationSpecies UIDSteeves, Laura
3Species, unique identification (Semantic URI)Species UID (Semantic URI)Steeves, Laura
4Species, unique identification (URI)Species UID (URI)Steeves, Laura
5TreatmentTreatSteeves, Laura
6Day of experimentDOEdaySteeves, Laurasampling time
7Temperature, waterTemp°CSteeves, Lauraaverage on the sampling day
8Tissue, dry massTissue dmgSteeves, Laura
9Dry mass, standard deviationDry m std dev±Steeves, LauraTissue
10Shell lengthShell lmmSteeves, Laura
11Shell length, standard deviationShell l std dev±Steeves, Laura
12Shell thicknessShell thickmmSteeves, Laura
13Shell thickness, standard deviationShell thick std dev±Steeves, Laura
14Shell strength per shell thicknessShell str/shell thickN/mmSteeves, Laura
15Shell strength per shell thickness, standard deviationShell str/shell thick std dev±Steeves, Laura
16Condition indexCISteeves, Laura
17Condition index, standard deviationCI std dev±Steeves, Laura
18Clearance rateCRl/hSteeves, Laura
19Clearance rate, standard deviationCR std dev±Steeves, Laura
20Filtration rateFRmg/hSteeves, Laura
21Filtration rate, standard deviationFR std dev±Steeves, Laura
22Rejection rateRejec ratemg/hSteeves, Laura
23Rejection rate, standard deviationRejec rate std dev±Steeves, Laura
24Ingestion rate, organic weightIR org wµg/hSteeves, Laura
25Ingestion rate, standard deviationIR std dev±Steeves, LauraOrganic
26Absorption rateAbsorpmg/hSteeves, Laura
27Absorption rate, standard deviationAbsorp std dev±Steeves, Laura
28Egestion rateEges ratemg/hSteeves, Laura
29Egestion rate, standard deviationEges rate std dev±Steeves, Laura
30Temperature, waterTemp°CSteeves, Laura
31Temperature, water, standard deviationTemp std dev±Steeves, Laura
32OxygenO2mg/lSteeves, Laura
33Oxygen, standard deviationO2 std dev±Steeves, Laura
34SalinitySalSteeves, Laura
35Salinity, standard deviationSal std dev±Steeves, Laura
36pHpHSteeves, Laurain situ, seawater scale
37pH, standard deviationpH std dev±Steeves, Laurain situ, seawater scale
38Carbon, inorganic, dissolvedDICµmol/kgSteeves, Laura
39Carbon, inorganic, dissolved, standard deviationDIC std dev±Steeves, Laura
40Alkalinity, totalATµmol/kgSteeves, Laura
41Alkalinity, total, standard deviationAT std dev±Steeves, Laura
42Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSteeves, Laura
43Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Steeves, Laura
44Aragonite saturation stateOmega ArgSteeves, Laura
45Aragonite saturation state, standard deviationOmega Arg std dev±Steeves, Laura
46Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
48pH, standard deviationpH std dev±Yang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
49Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
51Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
53Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
55Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
57Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
59Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
61Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
540 data points

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