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Carpenter, Robert C; Lantz, Coulson A; Shaw, Emily; Edmunds, Peter J (2024): Seawater carbonate chemistry and coral reef community metabolism [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.973469 (DOI registration in progress)

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Abstract:
Using fumes (5.0×0.3×0.3 m) located outdoors in Moorea, French Polynesia, we assembled local back reef communities with ~25% coral cover, and tested their response to pCO2 levels of 344, 633, 870 and 1146 μatm. Incubations began in late Austral spring (November 2015), and net community calcifcation (Gnet) and net community primary production (Pnet) were measured prior to treatments, 24 h after treatment began, and biweekly or monthly thereafter until early Austral autumn (March 2016).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-12.
Related to:
Carpenter, Robert C; Lantz, Coulson A; Shaw, Emily; Edmunds, Peter J (2018): Responses of coral reef community metabolism in flumes to ocean acidification. Marine Biology, 165(4), 66, https://doi.org/10.1007/s00227-018-3324-0
Source:
Carpenter, Robert C; Edmunds, Peter J (2019): Coral community hourly metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754685
Carpenter, Robert C; Edmunds, Peter J (2019): Coral community metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754676
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
Carpenter, Robert C; Edmunds, Peter J (2019): Carbonate chemistry from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754694
Carpenter, Robert C; Edmunds, Peter J (2019): Temperature and irradiance from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754644
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: -17.490700 * Longitude: -149.826000
Event(s):
Moorea_coral * Latitude: -17.490700 * Longitude: -149.826000 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeCarpenter, Robert C
2Treatment: partial pressure of carbon dioxideT:pCO2µatmCarpenter, Robert C
3IdentificationIDCarpenter, Robert CFlume
4DateDateCarpenter, Robert C
5Time point, descriptiveTime pointCarpenter, Robert C
6Net calcification rate of calcium carbonateNC CaCO3mmol/m2/hCarpenter, Robert Ccommunity
7Net primary production of oxygenNPP O2mmol/m2/hCarpenter, Robert C
8Local TimeLocal timeCarpenter, Robert C
9Net calcification rate of calcium carbonateNC CaCO3mmol/m2/hCarpenter, Robert Ccommunity, mean
10Net calcification rate of calcium carbonate, standard errorNC CaCO3 std e±Carpenter, Robert Ccommunity, mean
11Numbern#Carpenter, Robert Cincubations for community calcification
12Net primary production of oxygenNPP O2mmol/m2/hCarpenter, Robert Cmean
13Net primary production of oxygen, standard errorNPP O2 std e±Carpenter, Robert C
14Numbern#Carpenter, Robert Cincubations for primary production
15SalinitySalCarpenter, Robert C
16Temperature, waterTemp°CCarpenter, Robert C
17pH, total scalepHTCarpenter, Robert CPotentiometrictotal scale
18Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmCarpenter, Robert CCalculated using seacarb
19Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Carpenter, Robert CCalculated using seacarb
20Carbon, inorganic, dissolvedDICµmol/kgCarpenter, Robert CCalculated using seacarb
21Carbon, inorganic, dissolved, standard errorDIC std e±Carpenter, Robert CCalculated using seacarb
22Alkalinity, totalATµmol/kgCarpenter, Robert CPotentiometric titration
23Alkalinity, total, standard errorAT std e±Carpenter, Robert CPotentiometric titration
24Aragonite saturation stateOmega ArgCarpenter, Robert CCalculated using seacarb
25Aragonite saturation state, standard errorOmega Arg std e±Carpenter, Robert CCalculated using seacarb
26Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
5323 data points

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