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Carpenter, Robert C; Lantz, Coulson A; Shaw, Emily; Edmunds, Peter J (2024): Seawater carbonate chemistry and coral reef community metabolism [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.973469 (DOI registration in progress)

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Abstract:
Using fumes (5.0×0.3×0.3 m) located outdoors in Moorea, French Polynesia, we assembled local back reef communities with ~25% coral cover, and tested their response to pCO2 levels of 344, 633, 870 and 1146 μatm. Incubations began in late Austral spring (November 2015), and net community calcifcation (Gnet) and net community primary production (Pnet) were measured prior to treatments, 24 h after treatment began, and biweekly or monthly thereafter until early Austral autumn (March 2016).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-12.
Related to:
Carpenter, Robert C; Lantz, Coulson A; Shaw, Emily; Edmunds, Peter J (2018): Responses of coral reef community metabolism in flumes to ocean acidification. Marine Biology, 165(4), 66, https://doi.org/10.1007/s00227-018-3324-0
Source:
Carpenter, Robert C; Edmunds, Peter J (2019): Coral community hourly metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754685
Carpenter, Robert C; Edmunds, Peter J (2019): Coral community metabolism from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754676
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
Carpenter, Robert C; Edmunds, Peter J (2019): Carbonate chemistry from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754694
Carpenter, Robert C; Edmunds, Peter J (2019): Temperature and irradiance from outdoor flumes at the UCB Gump Research Station Moorea, French Polynesia from November of 2015 to March of 2016 [dataset]. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/754644
Coverage:
Latitude: -17.490700 * Longitude: -149.826000
Event(s):
Moorea_coral * Latitude: -17.490700 * Longitude: -149.826000 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Type of studyStudy typeCarpenter, Robert C
Treatment: partial pressure of carbon dioxideT:pCO2µatmCarpenter, Robert C
IdentificationIDCarpenter, Robert CFlume
DateDateCarpenter, Robert C
Time point, descriptiveTime pointCarpenter, Robert C
Net calcification rate of calcium carbonateNC CaCO3mmol/m2/hCarpenter, Robert Ccommunity
Net primary production of oxygenNPP O2mmol/m2/hCarpenter, Robert C
Local TimeLocal timeCarpenter, Robert C
Net calcification rate of calcium carbonateNC CaCO3mmol/m2/hCarpenter, Robert Ccommunity, mean
10 Net calcification rate of calcium carbonate, standard errorNC CaCO3 std e±Carpenter, Robert Ccommunity, mean
11 Numbern#Carpenter, Robert Cincubations for community calcification
12 Net primary production of oxygenNPP O2mmol/m2/hCarpenter, Robert Cmean
13 Net primary production of oxygen, standard errorNPP O2 std e±Carpenter, Robert C
14 Numbern#Carpenter, Robert Cincubations for primary production
15 SalinitySalCarpenter, Robert C
16 Temperature, waterTemp°CCarpenter, Robert C
17 pH, total scalepHTCarpenter, Robert CPotentiometrictotal scale
18 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmCarpenter, Robert CCalculated using seacarb
19 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Carpenter, Robert CCalculated using seacarb
20 Carbon, inorganic, dissolvedDICµmol/kgCarpenter, Robert CCalculated using seacarb
21 Carbon, inorganic, dissolved, standard errorDIC std e±Carpenter, Robert CCalculated using seacarb
22 Alkalinity, totalATµmol/kgCarpenter, Robert CPotentiometric titration
23 Alkalinity, total, standard errorAT std e±Carpenter, Robert CPotentiometric titration
24 Aragonite saturation stateOmega ArgCarpenter, Robert CCalculated using seacarb
25 Aragonite saturation state, standard errorOmega Arg std e±Carpenter, Robert CCalculated using seacarb
26 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
5323 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Study type

T:pCO2 [µatm]

ID
(Flume)

Date

Time point

NC CaCO3 [mmol/m2/h]
(community)

NPP O2 [mmol/m2/h]

Local time

NC CaCO3 [mmol/m2/h]
(community, mean)
10 
NC CaCO3 std e [±]
(community, mean)
11 
n [#]
(incubations for community cal...)
12 
NPP O2 [mmol/m2/h]
(mean)
13 
NPP O2 std e [±]
14 
n [#]
(incubations for primary produ...)
15 
Sal
16 
Temp [°C]
17 
pHT
(total scale, Potentiometric)
18 
pCO2water_SST_wet [µatm]
(Calculated using seacarb)
19 
pCO2water_SST_wet std e [±]
(Calculated using seacarb)
20 
DIC [µmol/kg]
(Calculated using seacarb)
21 
DIC std e [±]
(Calculated using seacarb)
22 
AT [µmol/kg]
(Potentiometric titration)
23 
AT std e [±]
(Potentiometric titration)
24 
Omega Arg
(Calculated using seacarb)
25 
Omega Arg std e [±]
(Calculated using seacarb)
26 
CSC flag
(Calculated using seacarb afte...)
27 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
28 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
29 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
30 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
31 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
32 
DIC [µmol/kg]
(Calculated using seacarb afte...)
33 
Omega Arg
(Calculated using seacarb afte...)
34 
Omega Cal
(Calculated using seacarb afte...)
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