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Lewis, Bonnie; Bender-Champ, Dorothea; Dove, Sophie; Diaz-Pulido, Guillermo (2025): Seawater carbonate chemistry and growth and photosynthesis of a Great Barrier Reef Coralline Alga [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.976835

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Published: 2025-02-25 • DOI registered: 2025-03-26

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Abstract:
This study examined the individual and interactive impacts of global and local stressors by investigating the effects of increased seawater pCO2, elevated nutrient concentrations and reduced light levels on linear growth and metabolic rates of the common branching crustose coralline alga Lithophyllum cf. pygmaeum.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-02-24.
Keyword(s):
Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Light; Lithophyllum pygmaeum; Macroalgae; Macro-nutrients; Plantae; Primary production/Photosynthesis; Respiration; Rhodophyta; Single species; South Pacific; Tropical
Related to:
Lewis, Bonnie; Bender-Champ, Dorothea; Dove, Sophie; Diaz-Pulido, Guillermo (2025): CO2 Fertilisation Counteracts the Negative Effect of Poor Water Quality on the Growth and Photosynthesis of a Great Barrier Reef Coralline Alga. Aquatic Conservation-Marine and Freshwater Ecosystems, 35(1), e70042, https://doi.org/10.1002/aqc.70042
Source:
Lewis, Bonnie; Bender-Champ, Dorothea; Dove, Sophie; Diaz-Pulido, Guillermo (2024): CO2 fertilisation counteracts the negative effect of poor water quality on the growth and photosynthesis of a Great Barrier Reef coralline alga_datasheets [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.28006220.V1
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: -23.433300 * Longitude: 151.928100
Date/Time Start: 2015-06-01T00:00:00 * Date/Time End: 2015-06-30T00:00:00
Event(s):
Heron_Island_Tenements_1_site * Latitude: -23.433300 * Longitude: 151.928100 * Date/Time Start: 2015-06-01T00:00:00 * Date/Time End: 2015-06-30T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeDiaz-Pulido, Guillermo
2Species, unique identificationSpecies UIDDiaz-Pulido, Guillermo
3Species, unique identification (URI)Species UID (URI)Diaz-Pulido, Guillermo
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Diaz-Pulido, Guillermo
5TreatmentTreatDiaz-Pulido, Guillermo
6ReplicateReplDiaz-Pulido, Guillermo
7Maximum quantum yield of photosystem IIFv/FmDiaz-Pulido, Guillermo1
8Maximum quantum yield of photosystem IIFv/FmDiaz-Pulido, Guillermo2
9Maximum quantum yield of photosystem IIFv/FmDiaz-Pulido, Guillermo3
10Respiration rate, oxygen, dark, per wet massResp O2 d/wmmmol/g/hDiaz-Pulido, Guillermo
11Light enhanced dark respiration, oxygen, per wet massLEDR O2/wmmmol/g/hDiaz-Pulido, Guillermo
12Net photosynthesis rate, oxygen, per wet massPN O2/wmmmol/g/hDiaz-Pulido, Guillermo
13Gross photosynthesis rate, oxygen, per wet massPG O2/wmmmol/g/hDiaz-Pulido, Guillermo
14Temperature, waterTemp°CDiaz-Pulido, Guillermo
15Temperature, water, standard errorT std e±Diaz-Pulido, Guillermo
16SalinitySalDiaz-Pulido, Guillermo
17Salinity, standard errorSal std e±Diaz-Pulido, Guillermo
18pH, NBS scalepH NBSDiaz-Pulido, GuillermoPotentiometric
19pH, standard errorpH std e±Diaz-Pulido, GuillermoPotentiometric
20Alkalinity, totalATµmol/kgDiaz-Pulido, GuillermoPotentiometric titration
21Alkalinity, total, standard errorAT std e±Diaz-Pulido, GuillermoPotentiometric titration
22Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmDiaz-Pulido, Guillermo
23Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Diaz-Pulido, Guillermo
24Bicarbonate ion[HCO3]-µmol/kgDiaz-Pulido, Guillermo
25Bicarbonate ion, standard error[HCO3]- std e±Diaz-Pulido, Guillermo
26Carbonate ion[CO3]2-µmol/kgDiaz-Pulido, Guillermo
27Carbonate ion, standard error[CO3]2- std e±Diaz-Pulido, Guillermo
28High magnesium calcite saturation stateOmega HMCDiaz-Pulido, Guillermo
29High magnesium calcite saturation state, standard errorOmega HMC std e±Diaz-Pulido, Guillermo
30Ammonium[NH4]+µmol/lDiaz-Pulido, Guillermo
31Ammonium, standard error[NH4]+ std e±Diaz-Pulido, Guillermo
32Phosphate[PO4]3-µmol/lDiaz-Pulido, Guillermo
33Phosphate, standard errorPO4 std e±Diaz-Pulido, Guillermo
34Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
3549 data points

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