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Sneed, Jennifer M; Campbell, Justin E; Audrey, Looby; Aurora, Giorgi; Paul, V J (2024): Seawater carbonate chemistry and photosynthesis and calcification of crustose coralline algae [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.974111 (DOI registration in progress)

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Abstract:
Here, we examine the effects of future seawater conditions (OW and OA) on the calcification and photosynthetic efficiency of two CCA species, Hydrolithon boergesenii and Paragoniolithon solubile. We also examine the effects of conditioning CCA in combined OA and OW on the settlement preferences of three coral species, Acropora palmata, Acropora cervicornis and Porites astreoides.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-12.
Keyword(s):
Acropora cervicornis; Acropora palmata; Animalia; Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Cnidaria; Coast and continental shelf; Hydrolithon boergesenii; Laboratory experiment; Macroalgae; Mortality/Survival; North Atlantic; Paragoniolithon solubile; Pelagos; Plantae; Porites astreoides; Primary production/Photosynthesis; Reproduction; Rhodophyta; Single species; Species interaction; Temperate; Temperature; Tropical; Zooplankton
Related to:
Sneed, Jennifer M; Campbell, Justin E; Audrey, Looby; Aurora, Giorgi; Paul, V J (2024): Varying effects of climate change on the photosynthesis and calcification of crustose coralline algae: Implications for settlement of coral larvae. Climate Change Ecology, 100090, https://doi.org/10.1016/j.ecochg.2024.100090
Source:
Sneed, Jennifer M (2024): Data and Rmarkdown files for all analysis and figures [dataset]. National Museum of Natural History, https://doi.org/10.25573/DATA.25290295
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Median Latitude: 20.678250 * Median Longitude: -84.729875 * South-bound Latitude: 16.803000 * West-bound Longitude: -88.082000 * North-bound Latitude: 24.553500 * East-bound Longitude: -81.377750
Date/Time Start: 2017-04-27T00:00:00 * Date/Time End: 2017-06-30T00:00:00
Event(s):
Big_Pine_Ledges * Latitude: 24.553500 * Longitude: -81.377750 * Date/Time: 2017-04-27T00:00:00
Carrie_Bow_Cay * Latitude: 16.803000 * Longitude: -88.082000 * Date/Time Start: 2017-06-01T00:00:00 * Date/Time End: 2017-06-30T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventSneed, Jennifer M
2Type of studyStudy typeSneed, Jennifer M
3ExperimentExpSneed, Jennifer M
4Time point, descriptiveTime pointSneed, Jennifer M
5Maximum quantum yield of photosystem IIFv/FmSneed, Jennifer M
6IdentificationIDSneed, Jennifer Mtank
7SpeciesSpeciesSneed, Jennifer MCCA
8TreatmentTreatSneed, Jennifer M
9Calcium carbonate massCaCO3 massmg/cm2Sneed, Jennifer Mtotal
10IdentificationIDSneed, Jennifer M
11Time in daysTimedaysSneed, Jennifer M
12Calcium carbonate massCaCO3 massmg/cm2Sneed, Jennifer MDay 29
13Calcification rateCalc ratemg/cm2Sneed, Jennifer M
14LocationLocationSneed, Jennifer M
15Larvae, settledLarvae sett#Sneed, Jennifer M
16Larvae, settledLarvae sett%Sneed, Jennifer M
17Larvae, settledLarvae sett#Sneed, Jennifer MTotal_settled_on_chip
18Larvae, settledLarvae sett%Sneed, Jennifer MTotal_settled_on_chip
19Larvae, settledLarvae sett#Sneed, Jennifer MTotal_settled_on_CCA
20Larvae, settledLarvae sett%Sneed, Jennifer MSettled_on_CCA
21Larvae, settledLarvae sett%Sneed, Jennifer MLocation
22SpeciesSpeciesSneed, Jennifer MCoral
23Experimental conditionExp conditionSneed, Jennifer M
24Number of individuals, survivedInd No survived#Sneed, Jennifer M
25Proportion of survivalSurvivalSneed, Jennifer M
26Health statusHealth statusSneed, Jennifer M
27CommentCommentSneed, Jennifer M
28PercentagePerc%Sneed, Jennifer MLiveCCA
29PercentagePerc%Sneed, Jennifer MDeadCCA
30PercentagePerc%Sneed, Jennifer MTotalCCA
31SalinitySalSneed, Jennifer M
32Salinity, standard errorSal std e±Sneed, Jennifer M
33Temperature, waterTemp°CSneed, Jennifer M
34Temperature, water, standard errorT std e±Sneed, Jennifer M
35pH, NBS scalepH NBSSneed, Jennifer M
36pH, standard errorpH std e±Sneed, Jennifer MNBS scale
37Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSneed, Jennifer M
38Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Sneed, Jennifer M
39Carbon, inorganic, dissolvedDICµmol/kgSneed, Jennifer M
40Carbon, inorganic, dissolved, standard errorDIC std e±Sneed, Jennifer M
41Aragonite saturation stateOmega ArgSneed, Jennifer M
42Aragonite saturation state, standard errorOmega Arg std e±Sneed, Jennifer M
43Alkalinity, totalATµmol/kgSneed, Jennifer M
44Alkalinity, total, standard errorAT std e±Sneed, Jennifer M
45Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
18288 data points

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