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Chen, Limei; Huang, Gengyin; Liang, Shuang; Liang, Jian; Wang, Hefeng; Liu, Huiru; Wang, Xiaoyu; Li, Li; Guo, Yongjun; Liu, Wenguang (2024): Seawater carbonate chemistry and oxygen consumption rates and ammonia excretion rates of Mactra veneriformis [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.974228

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Published: 2024-12-18 • DOI registered: 2025-01-16

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Abstract:
In this study, oxygen consumption rate, ammonia excretion rate, and transcriptome sequencing of mantle tissue analyses were conducted in white and purple shell-color populations of M. veneriformis under OA stress (pH = 7.6).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-17.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mactra veneriformis; Mollusca; North Pacific; Other metabolic rates; Respiration; Single species; Temperate
Related to:
Chen, Limei; Huang, Gengyin; Liang, Shuang; Liang, Jian; Wang, Hefeng; Liu, Huiru; Wang, Xiaoyu; Li, Li; Guo, Yongjun; Liu, Wenguang (2024): Comparative Physiological and Transcriptome Analyses Reveal the Responses to Ocean Acidification Challenge of Mactra veneriformis with Different Shell Colors. Fishes, 9(12), 486, https://doi.org/10.3390/fishes9120486
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 39.010000 * Longitude: 117.820000
Date/Time Start: 2023-07-08T00:00:00 * Date/Time End: 2023-07-08T00:00:00
Event(s):
Dongjianggang * Latitude: 39.010000 * Longitude: 117.820000 * Date/Time: 2023-07-08T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGuo, Yongjun
2Species, unique identificationSpecies UIDGuo, Yongjun
3Species, unique identification (URI)Species UID (URI)Guo, Yongjun
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Guo, Yongjun
5GroupGroupGuo, Yongjun
6Time in daysTimedaysGuo, Yongjun
7Treatment: pHT:pHGuo, Yongjun
8Respiration rate, oxygenResp O2mg/g/hGuo, Yongjun
9Respiration rate, oxygen, standard deviationResp O2 std dev±Guo, Yongjun
10Ammonia excretionNH3/[NH4]+ excmg/g/hGuo, Yongjun
11Ammonia excretion, standard deviationNH3/[NH4]+ exc std dev±Guo, Yongjun
12Respiration rate/ammonia excretionO/NGuo, Yongjun
13Respiration rate/ammonia excretion, standard deviationO/N std dev±Guo, Yongjun
14SalinitySalGuo, Yongjun
15pH, total scalepHTGuo, YongjunPotentiometric
16pH, standard deviationpH std dev±Guo, YongjunPotentiometrictotal scale
17Temperature, waterTemp°CGuo, Yongjun
18Temperature, water, standard deviationTemp std dev±Guo, Yongjun
19Alkalinity, totalATµmol/kgGuo, YongjunPotentiometric titration
20Alkalinity, total, standard deviationAT std dev±Guo, YongjunPotentiometric titration
21Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGuo, YongjunCalculated using CO2SYS
22Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Guo, YongjunCalculated using CO2SYS
23Aragonite saturation stateOmega ArgGuo, YongjunCalculated using CO2SYS
24Aragonite saturation state, standard deviationOmega Arg std dev±Guo, YongjunCalculated using CO2SYS
25Calcite saturation stateOmega CalGuo, YongjunCalculated using CO2SYS
26Calcite saturation state, standard deviationOmega Cal std dev±Guo, YongjunCalculated using CO2SYS
27Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
264 data points

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