González-Delgado, Sara; Perez-Portela, Rocío; Ortega-Martínez, Olga; Alfonso, Beatriz; Pereyra, Ricardo T; Hernandez, Jose Carlos (2024): Seawater carbonate chemistry and genomics variation of Arbacia lixula individuals living across a natural pH gradient in Canary Islands [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.973723 (DOI registration in progress)
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Abstract:
Our study explores genomic signs of adaptation in A. lixula to different water pH conditions. To achieve this, we analysed the genomics variation of A. lixula individuals living across a natural pH gradient in Canary Islands, Spain. We use a 2b-RADseq protocol with 74 samples from sites with varying pH levels (from 7.3 to 7.9 during low tide) and included a control site.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Mendeley Data (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-28.
Keyword(s):
Related to:
González-Delgado, Sara; Pérez-Portela, Rocío; Ortega-Martínez, Olga; Alfonso, Beatriz; Pereyra, Ricardo T; Hernández, José Carlos (2024): Genomic signals of adaptation to a natural CO2 gradient over a striking microgeographic scale. Marine Pollution Bulletin, 209, 117225, https://doi.org/10.1016/j.marpolbul.2024.117225
Source:
González-Delgado, Sara; Pérez-Portela, Rocío; Ortega-Martínez, Olga; Alfonso, Beatriz; Pereyra, Ricardo T; Hernández, José Carlos (2024): Datasets for genomic signals of adaptation along a natural CO2 gradient over striking microgeographic scale [dataset]. Mendeley Data, https://doi.org/10.17632/9PHF69MT8D.1
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Coverage:
Median Latitude: 28.494271 * Median Longitude: -17.820561 * South-bound Latitude: 28.455717 * West-bound Longitude: -17.846249 * North-bound Latitude: 28.615043 * East-bound Longitude: -17.754386
Date/Time Start: 2018-12-01T00:00:00 * Date/Time End: 2018-12-31T00:00:00
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License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
1554 data points