Citation:

PANGAEA.968971 (DOI registration in progress)

Name: Seawater carbonate chemistry and biological response to fluctuating seawater ph conditions in sea urchin echinus esculentus larvae
Published: 2024
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Echinodermata; Echinus esculentus; Growth/Morphology; Laboratory experiment; Mortality/Survival; North Atlantic; Other; Pelagos; Single species; Temperate; Zooplankton

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Abstract:

Using a complex experimental design, we investigated what part of the pH variability is driving the biological response of the sea urchin Echinus esculentus larvae. Comparing stable (pH 8.13, 7.82, 7.53) and fluctuating treatments (12 h at pH 8.13 and 12 h at pH 7.53) following natural or inverted diurnal cycles.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-12.

Keyword(s):

Animalia; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Echinodermata; Echinus esculentus; Growth/Morphology; Laboratory experiment; Mortality/Survival; North Atlantic; Other; Pelagos; Single species; Temperate; Zooplankton

Related to:

Duvane, Jossias Alberto; Dupont, Sam (2024): Drivers of biological response to fluctuating seawater ph conditions in sea urchin echinus esculentus larvae. Science of the Total Environment, 935, 173383, https://doi.org/10.1016/j.scitotenv.2024.173383

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Duvane, Jossias Alberto
2	Species, unique identification	Species UID		Duvane, Jossias Alberto
3	Species, unique identification (URI)	Species UID (URI)		Duvane, Jossias Alberto
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Duvane, Jossias Alberto
5	Treatment	Treat		Duvane, Jossias Alberto
6	Experiment day	Exp day	day	Duvane, Jossias Alberto		start
7	Experiment day	Exp day	day	Duvane, Jossias Alberto		end
8	Mortality	Mortality	1/day	Duvane, Jossias Alberto
9	Body length	BL	µm	Duvane, Jossias Alberto		growth, per log day
10	Calcification rate, ratio	Calc rate ratio		Duvane, Jossias Alberto		skeleton length/body length
11	Arm length, postoral	POL	µm	Duvane, Jossias Alberto		per body length (um)
12	Symmetry index	Symmetry index		Duvane, Jossias Alberto		Arm
13	Salinity	Sal		Duvane, Jossias Alberto
14	pH	pH		Duvane, Jossias Alberto		total scale, light
15	pH, standard error	pH std e	±	Duvane, Jossias Alberto		total scale, light
16	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Duvane, Jossias Alberto		light
17	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Duvane, Jossias Alberto		light
18	Calcite saturation state	Omega Cal		Duvane, Jossias Alberto		light
19	Calcite saturation state, standard error	Omega Cal std e	±	Duvane, Jossias Alberto		light
20	Aragonite saturation state	Omega Arg		Duvane, Jossias Alberto		light
21	Aragonite saturation state, standard error	Omega Arg std e	±	Duvane, Jossias Alberto		light
22	Alkalinity, total	AT	µmol/kg	Duvane, Jossias Alberto		light
23	Alkalinity, total, standard error	AT std e	±	Duvane, Jossias Alberto		light
24	Temperature, water	Temp	°C	Duvane, Jossias Alberto		light
25	Temperature, water, standard error	T std e	±	Duvane, Jossias Alberto		light
26	pH	pH		Duvane, Jossias Alberto		total scale, dark
27	pH, standard error	pH std e	±	Duvane, Jossias Alberto		total scale, dark
28	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Duvane, Jossias Alberto		dark
29	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Duvane, Jossias Alberto		dark
30	Calcite saturation state	Omega Cal		Duvane, Jossias Alberto		dark
31	Calcite saturation state, standard error	Omega Cal std e	±	Duvane, Jossias Alberto		dark
32	Aragonite saturation state	Omega Arg		Duvane, Jossias Alberto		dark
33	Aragonite saturation state, standard error	Omega Arg std e	±	Duvane, Jossias Alberto		dark
34	Alkalinity, total	AT	µmol/kg	Duvane, Jossias Alberto		dark
35	Alkalinity, total, standard error	AT std e	±	Duvane, Jossias Alberto		dark
36	Temperature, water	Temp	°C	Duvane, Jossias Alberto		dark
37	Temperature, water, standard error	T std e	±	Duvane, Jossias Alberto		dark
38	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
40	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
41	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
42	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
43	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
44	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
45	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
46	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	light
47	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
48	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
49	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
50	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
51	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
52	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
53	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark
54	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	dark

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

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3702 data points

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