Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Tissue-accumulated nickel, chromium and cobalt concentrations in Ostrea edulis measured by ICP-OES at the end of a chronic alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996221 (DOI registration in progress), In: Rump, M et al. (2026): Seawater carbonate chemistry, mortality, tissue trace metal and metabolomic data from a chronic ocean alkalinity enhancement exposure experiment with the European flat oyster Ostrea edulis [dataset bundled publication]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996264 (DOI registration in progress)
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Published: 2026-07-29
Abstract:
This dataset contains nickel, chromium and cobalt concentrations measured in gill, mantle and hepatopancreas tissue of individual European flat oysters (Ostrea edulis) sampled on day 63 (9 July 2024) at the end of the chronic alkalinity-enhancement exposure experiment. A total of 19 individual oysters were sampled (5 control, 5 olivine 250, 3 olivine 500, 3 dissolved 250 and 3 dissolved 500); not all three tissues could be obtained from every individual due to tissue availability. Ten measurements of the certified reference material ERM-CE278k (mussel tissue) are included across the three tissue batches for quality control. Samples for metal analysis were freeze-dried for 24 h, and dry weight was recorded prior to extraction. Extraction vials were pre-cleaned (p.a. quality) with concentrated nitric acid (65 %, single-distilled) and dried for 48 h. Approximately 2 mL of nitric acid was added to the dried tissues, followed by thermic digestion using a microwave digestion system (5 min heating at 400 W; 5 min heating to 100 °C at 800 W; 20 min heating to 175 °C and 20 min held, 1600 W). The digested solutions were transferred to clean vials and diluted to 25 mL; vials were weighed before and after filling to determine the precise sample weight. Metal concentrations of Ni, Cr and Co were measured on 12 March 2025 at the AWI ICP Facility on a Thermo Scientific iCAP 7000 Series Inductively Coupled Plasma Optical Emission Spectrometer (ICP-OES). Calibration was performed with an in-house standard composed of the respective individual element standards (ICP-Standards ROTI® Star, Carl Roth). The standard deviation of the control standard was 0.1 µg/l for Ni, 0.3 µg/l for Cr and 0.2 µg/l for Co. External reproducibility (RSD) was 0.5 % for Ni, 1.2 % for Cr and 0.7 % for Co. Limits of detection and quantification were 0.13 and 0.7 µg/l for Ni; 0.26 and 1.32 µg/l for Cr; and 0.10 and 0.47 µg/l for Co. Analytical accuracy was verified with the certified reference material ERM-CE278k.
Related to:
Rump, Marco; et al. (submitted): Ecotoxicological impacts of Ocean Alkalinity Enhancement on the European flat oyster Ostrea edulis: Insights from tissue metabolomics and metal analysis.
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Carbonate chemistry parameters calculated from measured pH, total alkalinity, salinity and temperature in the alkalization mesocosms of a chronic Ostrea edulis alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996219
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Carbonate chemistry parameters calculated from measured pH, total alkalinity, salinity and temperature in the exposure mesocosms of a chronic Ostrea edulis alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996220
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Concentrations of 27 polar metabolites in gill and mantle tissue of Ostrea edulis measured by ¹H-NMR spectroscopy during a chronic alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996222
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Glycogen concentration in the labial palps of Ostrea edulis during a chronic alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996218
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Oyster mortality and physicochemical parameters in the exposure mesocosms of a chronic Ostrea edulis alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996216
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Total alkalinity and pH during a short-term feeding experiment testing the contribution of shellfish diet (Reed Mariculture SD1800) to seawater alkalinity [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996217
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Total alkalinity and pH in the alkalization mesocosms of a chronic Ostrea edulis alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996214
Rump, Marco; Lannig, Gisela; Bock, Christian; Benthien, Albert; Pogoda, Bernadette; Antoni, Dominik; Gerdts, Gunnar (2026): Total alkalinity and pH in the exposure mesocosms of a chronic Ostrea edulis alkalinity-enhancement exposure experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.996215
Funding:
Coverage:
Latitude: 54.180327 * Longitude: 7.888944
Date/Time Start: 2024-04-17T00:00:00 * Date/Time End: 2025-03-12T00:00:00
Event(s):
ChronicOystersOAE_2024 * Latitude Start: 54.180327 * Longitude Start: 7.888944 * Latitude End: 54.180327 * Longitude End: 7.888944 * Date/Time Start: 2024-04-17T00:00:00 * Date/Time End: 2025-03-12T00:00:00 * Location Start: Helgoland, Germany * Location End: Helgoland, Germany * Method/Device: Mesocosm experiment (MESO)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Rump, Marco | |||
| 2 | Type of study | Study type | Rump, Marco | |||
| 3 | Tissues | Tissues | Rump, Marco | |||
| 4 | Sample ID | Sample ID | Rump, Marco | |||
| 5 | Individual ID | Ind ID | Rump, Marco | Individual oyster ID | ||
| 6 | Experiment day | Exp day | day | Rump, Marco | ||
| 7 | Sampling date | Sampling date | Rump, Marco | |||
| 8 | Treatment | Treat | Rump, Marco | |||
| 9 | Tissue, dry mass | Tis DM | mg | Rump, Marco | ||
| 10 | Vial, mass | Vial m | g | Rump, Marco | Empty | |
| 11 | Vial, mass | Vial m | g | Rump, Marco | Plus digested sample weight | |
| 12 | Sample, wet mass | Samp wet m | g | Rump, Marco | Digested sample solution | |
| 13 | Nickel | Ni | µg/l | Rump, Marco | ||
| 14 | Chromium | Cr | µg/l | Rump, Marco | ||
| 15 | Cobalt | Co | µg/l | Rump, Marco | ||
| 16 | Nickel | Ni | µg/g | Rump, Marco | per tissue dry mass | |
| 17 | Chromium | Cr | µg/g | Rump, Marco | per tissue dry mass | |
| 18 | Cobalt | Co | µg/g | Rump, Marco | per tissue dry mass |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1017 data points
