Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Spencer, Laura H; Slesinger, Emily; Spies, Ingrid B; Laurel, Benjamin J; Hurst, Thomas P (2026): Seawater carbonate chemistry and molecular indicators of warming and other climate stressors in larval Pacific cod [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.992881 (DOI registration in progress)

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2026-03-10

RIS CitationBibTeX Citation Share

Abstract:
Experimental work by Slesinger et al. (2024) corroborated the hypothesis that warming directly impacts recruitment by increasing larval mortality rates. In this companion study, we applied transcriptomics with larvae from Slesinger et al. (2024) to better understand how warming affected their physiology and identify potential mechanisms contributing to mortality.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-03-10.
Keyword(s):
Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gadus macrocephalus; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; Mortality/Survival; Nekton; North Pacific; Pelagos; Single species; Temperate; Temperature
Related to:
Slesinger, Emily; Mundorf, Samantha; Laurel, Benjamin J; Hurst, Thomas P (2024): Seawater carbonate chemistry and mortality, growth, and condition of Pacifc cod (Gadus macrocephalus) at early life stages [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.971545
Spencer, Laura H; Slesinger, Emily; Spies, Ingrid B; Laurel, Benjamin J; Hurst, Thomas P (2026): Molecular indicators of warming and other climate stressors in larval Pacific cod. Canadian Journal of Fisheries and Aquatic Sciences, 83, 1-14, https://doi.org/10.1139/cjfas-2024-0264
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
laurahspencer/pcod-2022: Release for publishing (2025). Zenodo, https://doi.org/10.5281/ZENODO.15399957
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSpies, Ingrid B
2Species, unique identificationSpecies UIDSpies, Ingrid B
3Species, unique identification (URI)Species UID (URI)Spies, Ingrid B
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Spies, Ingrid B
5TreatmentTreatSpies, Ingrid B
6SurvivalSurvival%Spies, Ingrid B
7Survival rate, standard deviationSurvival rate std dev±Spies, Ingrid B
8MortalityMortality%Spies, Ingrid BInstantaneous daily
9Mortality, standard deviationMortality std dev±Spies, Ingrid BInstantaneous daily
10Condition factorCFSpies, Ingrid BMorphometric-based
11Condition factor, standard deviationCF std dev±Spies, Ingrid BMorphometric-based
12Condition factorCFSpies, Ingrid BDry weight-based
13Condition factor, standard deviationCF std dev±Spies, Ingrid BDry weight-based
14Growth rateµmm/daySpies, Ingrid Blength-based
15Growth rate, standard deviationµ std dev±Spies, Ingrid Blength-based
16Growth rateµmm/daySpies, Ingrid Bmass-based
17Growth rateµmm/daySpies, Ingrid Bmass-based
18pH, total scalepHTSpies, Ingrid B
19pH, standard deviationpH std dev±Spies, Ingrid Btotal scale
20Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSpies, Ingrid B
21Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Spies, Ingrid B
22Temperature, waterTemp°CSpies, Ingrid B
23Temperature, water, standard deviationTemp std dev±Spies, Ingrid B
24SalinitySalSpies, Ingrid B
25Salinity, standard deviationSal std dev±Spies, Ingrid B
26Carbon, inorganic, dissolvedDICµmol/kgSpies, Ingrid B
27Carbon, inorganic, dissolved, standard deviationDIC std dev±Spies, Ingrid B
28Alkalinity, totalATµmol/kgSpies, Ingrid B
29Alkalinity, total, standard deviationAT std dev±Spies, Ingrid B
30Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32pH, standard deviationpH std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)total scale
33Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
35Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
37Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
39Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
41Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
43Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
45Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
264 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML