Thielecke, Antonia; Whitehouse, Martin J; Fernández-Méndez, Mar: Single cell carbon, nitrate and silicic acid uptake rates of Arctic phytoplankton in response to light and silicic acid interactions (SIMS) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.991544 (dataset in review)
Abstract:
This data was collected during the Polarstern cruise PS138 (ArcWatch1) from August 3 to September 30, 2023 to the Central Arctic Ocean. At three stations during the Polarstern cruise PS138 (ArcWatch1) we conducted bioassays on board in order to assess the interactive effects of light and dSi on single cell uptake rates of carbon (C), nitrogen (N), and silicon (Si) for various phytoplankton groups. Single-cell uptake rates were obtained at stations 3, 4 and 5 for each dSi level (0, 2, 5, 10, 20 µM added dSi) at the 80 µmol photons m-2 s-1 light level and for each light level (0, 10, 40, 80, 320 µmol photons m-2 s-1) at the 5 µM added dSi level, resulting in a total of 9 samples for each station. For each bioassay we collected water samples from the chlorophyll maximum (Chl a max) using a CTD rosette, prefiltered the water with a 200 µm mesh and added different concentrations of dSi (0, 2, 5, 10, and 20 µmol L⁻¹ above ambient concentrations) to establish a dSi gradient. Samples were spiked with 13C labelled sodium bicarbonate, 15N labelled potassium nitrate and 30Si-sodium metasilicate at a 10% enrichment level. To avoid insufficient cell densities on the resulting filters, we added concentrated phytoplankton to the cell culture bottles. The phytoplankton community from the same depth was concentrated using reverse filtration and 2 mL of the concentrate corresponding to ~1.5-2.5 L of concentrated volume were added to each cell culture bottle before the incubation. After 24h of incubation the samples were fixed with 2 % EM-grade paraformaldehyde (PFA; EMS, USA) for 24 h in the dark at 4 °C. The fixed cells were then filtered onto 2 μm pore size polycarbonate filters (ø 25 mm; Merck Millipore Ltd., Cork, Ireland) and washed with phosphate-buffered saline (Merck Millipore Ltd., Cork, Ireland ). Single-cell 15N, 13C and 30Si assimilation rates were determined by high resolution secondary ion mass spectrometry (HR-SIMS; IMS 1280, CAMECA, Gennevilliers, France) at the Natural History Museum in Stockholm, Sweden. From the single-cell data we identified five different phytoplankton types (centric diatoms, pennate diatoms, elliptic dinoflagellates, spherical dinoflagellates, silicoflagellates and small flagellates <10µm length). Biovolumes were calculated assuming standard phytoplankton shapes (Hillebrand et al., 1999) and estimated fixed width:height ratios using microscopy and observations of SIMS measurements.
Keyword(s):
Related to:
Hillebrand, Helmut; Dürselen, Claus-Dieter; Kirschtel, David; Pollingher, U; Zohary, Tamar (1999): Biovolume calculation for pelagic and benthic microalgae. Journal of Phycology, 35(2), 403-424, https://doi.org/10.1046/j.1529-8817.1999.3520403.x
Thielecke, Antonia; Eggers, Sarah Lena; Allhusen, Erika; Murawski, Sandra; Tippenhauer, Sandra; Rabe, Benjamin; Torres-Valdés, Sinhué: Environmental data collected during PS138 (ArcWatch1) supporting bioassays measuring carbon, nitrate and silica uptake in response to light and silicic acid interactions (EnvironmentalData) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.991537
Thielecke, Antonia; Krause, Jeffrey W; Stefels, Jacqueline; Torres-Valdés, Sinhué; Bryan, Natasha; Fernández-Méndez, Mar: Bulk carbon, nitrate and silicic acid uptake rates of Arctic phytoplankton in response to interactive light and silicic acid gradients (CNSiUptake): [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.991536
Thielecke, Antonia; Krause, Jeffrey W; Torres-Valdés, Sinhué; Eggers, Sarah Lena; Bryan, Natasha; Narberhaus, Anna; Rabe, Benjamin; Stefels, Jacqueline; Whitehouse, Martin J; Jeon, Heejin; Fernández-Méndez, Mar (in review): Light and silicic acid co-limit late summer primary productivity across the Central Arctic Ocean.
Thielecke, Antonia; Narberhaus, Anna: Phytoplankton taxonomy from bioassays for carbon, nitrate and silica uptake of Arctic phytoplankton in response to light and silicic acid interactions (Microscopy) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.991539
Torres-Valdés, Sinhué; Thielecke, Antonia: Profiles of nitrate and nitrite and silicic acid during PS138 (ArcWatch 1) to the Central Arctic Ocean (NutrientProfiles) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.991545
Project(s):
Funding:
Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven (AWI), grant/award no. AWI_PS138_02: Biological Oceanography
Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven (AWI), grant/award no. AWI_PS138_03: Physical and Chemical Oceanography
Coverage:
Median Latitude: 87.583170 * Median Longitude: 61.731899 * South-bound Latitude: 85.033489 * West-bound Longitude: -1.940574 * North-bound Latitude: 89.771984 * East-bound Longitude: 130.013152
Date/Time Start: 2023-08-29T17:25:16 * Date/Time End: 2023-09-14T12:29:24
Minimum Elevation: -4376.0 m * Maximum Elevation: -4242.0 m
Event(s):
PS138_109-1 * Latitude: 85.033489 * Longitude: 130.013152 * Date/Time: 2023-08-29T17:25:16 * Elevation: -4301.0 m * O2A Registry URI: https://registry.o2a-data.de/items/5452 * Campaign: PS138 (ArcWatch-1) * Basis: Polarstern * Method/Device: CTD/Rosette (CTD-RO) * Comment: IceStation #5, at max depth
PS138_162-1 * Latitude: 89.771984 * Longitude: -1.940574 * Date/Time: 2023-09-10T21:13:40 * Elevation: -4242.0 m * O2A Registry URI: https://registry.o2a-data.de/items/5452 * Campaign: PS138 (ArcWatch-1) * Basis: Polarstern * Method/Device: CTD/Rosette (CTD-RO) * Comment: IceStation #7, at max depth
PS138_186-1 * Latitude: 87.944038 * Longitude: 57.123119 * Date/Time: 2023-09-14T12:29:24 * Elevation: -4376.0 m * O2A Registry URI: https://registry.o2a-data.de/items/5452 * Campaign: PS138 (ArcWatch-1) * Basis: Polarstern * Method/Device: CTD/Rosette (CTD-RO) * Comment: IceStation #8, at max depth
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Thielecke, Antonia | |||
| 2 | Type of study | Study type | Thielecke, Antonia | |||
| 3 | Ice-station | Ice-station | Thielecke, Antonia | |||
| 4 | Treatment: silica, dissolved, added | T: Si diss add | µmol/l | Thielecke, Antonia | ||
| 5 | Treatment: light intensity | T:Io | µmol/m2/s | Thielecke, Antonia | ||
| 6 | File name | File name | Thielecke, Antonia | |||
| 7 | Type | Type | Thielecke, Antonia | Cell type; manual identifier grouping the cells in broad taxonomic and geometric categories | ||
| 8 | Method comment | Method comm | Thielecke, Antonia | Full cell [yes/no]; manual identifier if the ROI encloses a full or partial cell | ||
| 9 | Area | Area | µm2 | Thielecke, Antonia | ||
| 10 | Number of pixels | No pix | # | Thielecke, Antonia | ||
| 11 | Atom percent, 15N/14N | At per 15N/14N | % | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 12 | Atom percent, 15N/14N, standard deviation | At per 15N/14N std dev | ± | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 13 | Atom percent, 13C/12C | At per 13C/12C | % | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 14 | Atom percent, 13C/12C, standard deviation | At per 13C/12C std dev | ± | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 15 | Atom percent, 30Si/28Si | At per 30Si/28Si | % | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 16 | Atom percent, 30Si/28Si, standard deviation | At per 30Si/28Si std dev | ± | Thielecke, Antonia | Secondary ion mass spectrometry (SIMS), Cameca, IMS1280-HR | |
| 17 | Atom percent, 30Si | At perc 30Si | % | Thielecke, Antonia | calculated from normalized ratio | |
| 18 | Atom percent, 15N | At perc 15N | % | Thielecke, Antonia | calculated from normalized ratio | |
| 19 | Atom percent, 13C | At perc 13C | % | Thielecke, Antonia | calculated from normalized ratio | |
| 20 | Cell biovolume | Cell biovol | µm3 | Thielecke, Antonia | Esimated using the area and standardized geometric shapes for 5 different phytoplankton types after Hillebrand et al. (1999) | |
| 21 | Carbon, organic, particulate, per cell | POC/cell | pg/# | Thielecke, Antonia | after Menden-Deuer and Lessard (2000) | |
| 22 | Carbon uptake rate, specific | C upt rate spec | 1/day | Thielecke, Antonia | after Slawyk et al. (1977) | |
| 23 | Nitrate uptake rate, specific | NO3 upt rate spec | 1/day | Thielecke, Antonia | after Shiozaki et al. (2009) | |
| 24 | Dissolved silica uptake rate, specific | dSi upt rate spec | 1/day | Thielecke, Antonia | Si uptake (Nelson & Goering, 1977) | |
| 25 | Carbon uptake, per cell | C upt/cell | pg/#/day | Thielecke, Antonia | after Shiozaki et al. (2009) |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
14320 data points
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View dataset as HTML (shows only first 2000 rows)
