Citation:

PANGAEA.969125 (DOI registration in progress)

Name: Seawater carbonate chemistry and biological indices and oxidative stress responses of marine crab Scylla serrata to the impact of ocean acidification and cadmium toxicity
Published: 2024
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Inorganic toxins; Laboratory experiment; Laboratory strains; Mortality/Survival; Not applicable; Other metabolic rates; Other studied parameter or process; Scylla serrata; Single species

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Abstract:

In the current study, the effect of OA on the toxicity of cadmium (Cd) in the crab Scylla serrata was evaluated. Crab instars (0.07 cm length and 0.1 g weight) were subjected to pH 8.2, 7.8, 7.6, 7.4, 7.2, and 7.0 with and without 0.01 mg l−1 of Cd for 60 days.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-19.

Keyword(s):

Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Inorganic toxins; Laboratory experiment; Laboratory strains; Mortality/Survival; Not applicable; Other metabolic rates; Other studied parameter or process; Scylla serrata; Single species

Related to:

Thangal, Said Hamid; Nandhinipriya, Ramamoorthy; Vasuki, Chandrasekaran; Gayathri, Velusamy; Anandhan, Krishnan; Yogeshwaran, Arumugam; Muralisankar, T; Ramesh, Mathan; Rajaram, Rajendiran; Santhanam, P; Maran, Balu Alagar Venmathi (2023): The impact of ocean acidification and cadmium toxicity in the marine crab Scylla serrata: Biological indices and oxidative stress responses. Chemosphere, 345, 140447, https://doi.org/10.1016/j.chemosphere.2023.140447

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Thangal, Said Hamid
2	Species, unique identification	Species UID		Thangal, Said Hamid
3	Species, unique identification (URI)	Species UID (URI)		Thangal, Said Hamid
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Thangal, Said Hamid
5	Treatment	Treat		Thangal, Said Hamid
6	Treatment: pH	T:pH		Thangal, Said Hamid
7	Survival	Survival	%	Thangal, Said Hamid
8	Survival rate, standard deviation	Survival rate std dev	±	Thangal, Said Hamid
9	Length	l	cm	Thangal, Said Hamid		gain, final length-initial length
10	Length, standard deviation	l std dev	±	Thangal, Said Hamid		gain, final length-initial length
11	Mass change	Mass chn	g	Thangal, Said Hamid		gain, final mass-initial mass
12	Mass change, standard deviation	Mass chn std dev	±	Thangal, Said Hamid		gain, final mass-initial mass
13	Length	l	cm	Thangal, Said Hamid		Final
14	Length, standard deviation	l std dev	±	Thangal, Said Hamid		Final
15	Mass	Mass	g	Thangal, Said Hamid		Final
16	Mass, standard deviation	Mass std dev	±	Thangal, Said Hamid		Final
17	Specific growth rate	SGR	%/day	Thangal, Said Hamid
18	Specific growth rate, standard deviation	SGR std dev	±	Thangal, Said Hamid
19	Molt per day	Molt/day	#/day	Thangal, Said Hamid
20	Molt per day, standard deviation	Molt/day std dev	±	Thangal, Said Hamid
21	Feed intake, per crab	Feed intake/crab	g/#/day	Thangal, Said Hamid
22	Feed intake, standard deviation	Feed intake std dev	±	Thangal, Said Hamid
23	Feed conversion ratio	FCR		Thangal, Said Hamid
24	Feed conversion ratio, standard deviation	FCR std dev	±	Thangal, Said Hamid
25	Superoxide dismutase activity, unit per protein mass	SOD/prot	U/mg	Thangal, Said Hamid
26	Superoxide dismutase activity, standard deviation	SOD std dev	±	Thangal, Said Hamid
27	Catalase activity, per protein mass	CAT/prot	µmol/min/mg	Thangal, Said Hamid
28	Catalase activity, standard deviation	CAT std dev	±	Thangal, Said Hamid
29	Lipid peroxidation activity, per protein	LPO/prot	nmol/mg	Thangal, Said Hamid
30	Lipid peroxidation activity, standard deviation	LPO/prot std dev	±	Thangal, Said Hamid
31	Proteins, in tissue	PTR	mg/g	Thangal, Said Hamid
32	Proteins, standard deviation	Protein std dev	±	Thangal, Said Hamid
33	Carbohydrates, total	CHO tot	µg/g	Thangal, Said Hamid
34	Carbohydrates, total, standard deviation	CHO tot std dev	±	Thangal, Said Hamid
35	Amino acids	AA	µg/g	Thangal, Said Hamid
36	Amino acid, standard deviation	AA std dev	±	Thangal, Said Hamid
37	Lipids, total	Lipids tot	µg/g	Thangal, Said Hamid
38	Lipids, total, standard deviation	Lipids tot std dev	±	Thangal, Said Hamid
39	Glutamic oxaloacetate transaminase activity	GOT act	U/ml	Thangal, Said Hamid
40	Glutamic oxaloacetate transaminase activity, standard deviation	GOT act std dev	±	Thangal, Said Hamid
41	Glutamic pyruvate transaminase activity	GPT act	U/ml	Thangal, Said Hamid
42	Glutamic pyruvate transaminase activity, standard deviation	GPT act std dev	±	Thangal, Said Hamid
43	Alkaline phosphatase activity, per protein	ALP/prot	mmol/mg/min	Thangal, Said Hamid
44	Alkaline phosphatase activity, standard deviation	ALKP A std dev	±	Thangal, Said Hamid
45	Cadmium	Cd	µg/l	Thangal, Said Hamid		in seawater
46	Cadmium, standard deviation	Cd std dev	±	Thangal, Said Hamid		in seawater
47	Cadmium	Cd	µg/l	Thangal, Said Hamid		in crab tissue
48	Cadmium, standard deviation	Cd std dev	±	Thangal, Said Hamid		in crab tissue
49	Hemocytes	Hemocytes	#/ml	Thangal, Said Hamid
50	Hemocytes, standard deviation	Hemocytes std dev	±	Thangal, Said Hamid
51	Salinity	Sal		Thangal, Said Hamid
52	Salinity, standard deviation	Sal std dev	±	Thangal, Said Hamid
53	Temperature, water	Temp	°C	Thangal, Said Hamid
54	Temperature, water, standard deviation	Temp std dev	±	Thangal, Said Hamid
55	pH	pH		Thangal, Said Hamid		total scale
56	pH, standard deviation	pH std dev	±	Thangal, Said Hamid		total scale
57	Oxygen, dissolved	DO	ml/l	Thangal, Said Hamid
58	Oxygen, dissolved, standard deviation	DO std dev	±	Thangal, Said Hamid
59	Alkalinity, total	AT	µmol/kg	Thangal, Said Hamid
60	Alkalinity, total, standard deviation	AT std dev	±	Thangal, Said Hamid
61	Carbon, inorganic, dissolved	DIC	µmol/kg	Thangal, Said Hamid
62	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Thangal, Said Hamid
63	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Thangal, Said Hamid
64	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Thangal, Said Hamid
65	Bicarbonate ion	[HCO3]-	µmol/kg	Thangal, Said Hamid
66	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Thangal, Said Hamid
67	Carbonate ion	[CO3]2-	µmol/kg	Thangal, Said Hamid
68	Carbonate ion, standard deviation	[CO3]2- std dev	±	Thangal, Said Hamid
69	Calcite saturation state	Omega Cal		Thangal, Said Hamid
70	Calcite saturation state, standard deviation	Omega Cal std dev	±	Thangal, Said Hamid
71	Aragonite saturation state	Omega Arg		Thangal, Said Hamid
72	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Thangal, Said Hamid
73	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
74	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
75	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
76	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
77	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
78	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
79	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
80	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
81	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
82	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
83	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
84	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
85	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
86	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
87	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
88	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
89	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

1044 data points

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