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Thangal, Said Hamid; Nandhinipriya, Ramamoorthy; Vasuki, Chandrasekaran; Gayathri, Velusamy; Anandhan, Krishnan; Yogeshwaran, Arumugam; Muralisankar, T; Ramesh, Mathan; Rajaram, Rajendiran; Santhanam, P; Maran, Balu Alagar Venmathi (2024): Seawater carbonate chemistry and biological indices and oxidative stress responses of marine crab Scylla serrata to the impact of ocean acidification and cadmium toxicity [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969125 (DOI registration in progress)

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Abstract:
In the current study, the effect of OA on the toxicity of cadmium (Cd) in the crab Scylla serrata was evaluated. Crab instars (0.07 cm length and 0.1 g weight) were subjected to pH 8.2, 7.8, 7.6, 7.4, 7.2, and 7.0 with and without 0.01 mg l−1 of Cd for 60 days.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-19.
Keyword(s):
Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Inorganic toxins; Laboratory experiment; Laboratory strains; Mortality/Survival; Not applicable; Other metabolic rates; Other studied parameter or process; Scylla serrata; Single species
Related to:
Thangal, Said Hamid; Nandhinipriya, Ramamoorthy; Vasuki, Chandrasekaran; Gayathri, Velusamy; Anandhan, Krishnan; Yogeshwaran, Arumugam; Muralisankar, T; Ramesh, Mathan; Rajaram, Rajendiran; Santhanam, P; Maran, Balu Alagar Venmathi (2023): The impact of ocean acidification and cadmium toxicity in the marine crab Scylla serrata: Biological indices and oxidative stress responses. Chemosphere, 345, 140447, https://doi.org/10.1016/j.chemosphere.2023.140447
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Type of studyStudy typeThangal, Said Hamid
Species, unique identificationSpecies UIDThangal, Said Hamid
Species, unique identification (URI)Species UID (URI)Thangal, Said Hamid
Species, unique identification (Semantic URI)Species UID (Semantic URI)Thangal, Said Hamid
TreatmentTreatThangal, Said Hamid
Treatment: pHT:pHThangal, Said Hamid
SurvivalSurvival%Thangal, Said Hamid
Survival rate, standard deviationSurvival rate std dev±Thangal, Said Hamid
LengthlcmThangal, Said Hamidgain, final length-initial length
10 Length, standard deviationl std dev±Thangal, Said Hamidgain, final length-initial length
11 Mass changeMass chngThangal, Said Hamidgain, final mass-initial mass
12 Mass change, standard deviationMass chn std dev±Thangal, Said Hamidgain, final mass-initial mass
13 LengthlcmThangal, Said HamidFinal
14 Length, standard deviationl std dev±Thangal, Said HamidFinal
15 MassMassgThangal, Said HamidFinal
16 Mass, standard deviationMass std dev±Thangal, Said HamidFinal
17 Specific growth rateSGR%/dayThangal, Said Hamid
18 Specific growth rate, standard deviationSGR std dev±Thangal, Said Hamid
19 Molt per dayMolt/day#/dayThangal, Said Hamid
20 Molt per day, standard deviationMolt/day std dev±Thangal, Said Hamid
21 Feed intake, per crabFeed intake/crabg/#/dayThangal, Said Hamid
22 Feed intake, standard deviationFeed intake std dev±Thangal, Said Hamid
23 Feed conversion ratioFCRThangal, Said Hamid
24 Feed conversion ratio, standard deviationFCR std dev±Thangal, Said Hamid
25 Superoxide dismutase activity, unit per protein massSOD/protU/mgThangal, Said Hamid
26 Superoxide dismutase activity, standard deviationSOD std dev±Thangal, Said Hamid
27 Catalase activity, per protein massCAT/protµmol/min/mgThangal, Said Hamid
28 Catalase activity, standard deviationCAT std dev±Thangal, Said Hamid
29 Lipid peroxidation activity, per proteinLPO/protnmol/mgThangal, Said Hamid
30 Lipid peroxidation activity, standard deviationLPO/prot std dev±Thangal, Said Hamid
31 Proteins, in tissuePTRmg/gThangal, Said Hamid
32 Proteins, standard deviationProtein std dev±Thangal, Said Hamid
33 Carbohydrates, totalCHO totµg/gThangal, Said Hamid
34 Carbohydrates, total, standard deviationCHO tot std dev±Thangal, Said Hamid
35 Amino acidsAAµg/gThangal, Said Hamid
36 Amino acid, standard deviationAA std dev±Thangal, Said Hamid
37 Lipids, totalLipids totµg/gThangal, Said Hamid
38 Lipids, total, standard deviationLipids tot std dev±Thangal, Said Hamid
39 Glutamic oxaloacetate transaminase activityGOT actU/mlThangal, Said Hamid
40 Glutamic oxaloacetate transaminase activity, standard deviationGOT act std dev±Thangal, Said Hamid
41 Glutamic pyruvate transaminase activityGPT actU/mlThangal, Said Hamid
42 Glutamic pyruvate transaminase activity, standard deviationGPT act std dev±Thangal, Said Hamid
43 Alkaline phosphatase activity, per proteinALP/protmmol/mg/minThangal, Said Hamid
44 Alkaline phosphatase activity, standard deviationALKP A std dev±Thangal, Said Hamid
45 CadmiumCdµg/lThangal, Said Hamidin seawater
46 Cadmium, standard deviationCd std dev±Thangal, Said Hamidin seawater
47 CadmiumCdµg/lThangal, Said Hamidin crab tissue
48 Cadmium, standard deviationCd std dev±Thangal, Said Hamidin crab tissue
49 HemocytesHemocytes#/mlThangal, Said Hamid
50 Hemocytes, standard deviationHemocytes std dev±Thangal, Said Hamid
51 SalinitySalThangal, Said Hamid
52 Salinity, standard deviationSal std dev±Thangal, Said Hamid
53 Temperature, waterTemp°CThangal, Said Hamid
54 Temperature, water, standard deviationTemp std dev±Thangal, Said Hamid
55 pHpHThangal, Said Hamidtotal scale
56 pH, standard deviationpH std dev±Thangal, Said Hamidtotal scale
57 Oxygen, dissolvedDOml/lThangal, Said Hamid
58 Oxygen, dissolved, standard deviationDO std dev±Thangal, Said Hamid
59 Alkalinity, totalATµmol/kgThangal, Said Hamid
60 Alkalinity, total, standard deviationAT std dev±Thangal, Said Hamid
61 Carbon, inorganic, dissolvedDICµmol/kgThangal, Said Hamid
62 Carbon, inorganic, dissolved, standard deviationDIC std dev±Thangal, Said Hamid
63 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmThangal, Said Hamid
64 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Thangal, Said Hamid
65 Bicarbonate ion[HCO3]-µmol/kgThangal, Said Hamid
66 Bicarbonate ion, standard deviation[HCO3]- std dev±Thangal, Said Hamid
67 Carbonate ion[CO3]2-µmol/kgThangal, Said Hamid
68 Carbonate ion, standard deviation[CO3]2- std dev±Thangal, Said Hamid
69 Calcite saturation stateOmega CalThangal, Said Hamid
70 Calcite saturation state, standard deviationOmega Cal std dev±Thangal, Said Hamid
71 Aragonite saturation stateOmega ArgThangal, Said Hamid
72 Aragonite saturation state, standard deviationOmega Arg std dev±Thangal, Said Hamid
73 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
74 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
75 Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
76 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
77 Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
78 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
79 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
80 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
81 Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
82 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
83 Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
84 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
85 Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
86 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
87 Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
88 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
89 Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Size:
1044 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Study type

Species UID

Species UID (URI)

Species UID (Semantic URI)

Treat

T:pH

Survival [%]

Survival rate std dev [±]

l [cm]
(gain, final length-initial le...)
10 
l std dev [±]
(gain, final length-initial le...)
11 
Mass chn [g]
(gain, final mass-initial mass)
12 
Mass chn std dev [±]
(gain, final mass-initial mass)
13 
l [cm]
(Final)
14 
l std dev [±]
(Final)
15 
Mass [g]
(Final)
16 
Mass std dev [±]
(Final)
17 
SGR [%/day]
18 
SGR std dev [±]
19 
Molt/day [#/day]
20 
Molt/day std dev [±]
21 
Feed intake/crab [g/#/day]
22 
Feed intake std dev [±]
23 
FCR
24 
FCR std dev [±]
25 
SOD/prot [U/mg]
26 
SOD std dev [±]
27 
CAT/prot [µmol/min/mg]
28 
CAT std dev [±]
29 
LPO/prot [nmol/mg]
30 
LPO/prot std dev [±]
31 
PTR [mg/g]
32 
Protein std dev [±]
33 
CHO tot [µg/g]
34 
CHO tot std dev [±]
35 
AA [µg/g]
36 
AA std dev [±]
37 
Lipids tot [µg/g]
38 
Lipids tot std dev [±]
39 
GOT act [U/ml]
40 
GOT act std dev [±]
41 
GPT act [U/ml]
42 
GPT act std dev [±]
43 
ALP/prot [mmol/mg/min]
44 
ALKP A std dev [±]
45 
Cd [µg/l]
(in seawater)
46 
Cd std dev [±]
(in seawater)
47 
Cd [µg/l]
(in crab tissue)
48 
Cd std dev [±]
(in crab tissue)
49 
Hemocytes [#/ml]
50 
Hemocytes std dev [±]
51 
Sal
52 
Sal std dev [±]
53 
Temp [°C]
54 
Temp std dev [±]
55 
pH
(total scale)
56 
pH std dev [±]
(total scale)
57 
DO [ml/l]
58 
DO std dev [±]
59 
AT [µmol/kg]
60 
AT std dev [±]
61 
DIC [µmol/kg]
62 
DIC std dev [±]
63 
pCO2water_SST_wet [µatm]
64 
pCO2 std dev [±]
65 
[HCO3]- [µmol/kg]
66 
[HCO3]- std dev [±]
67 
[CO3]2- [µmol/kg]
68 
[CO3]2- std dev [±]
69 
Omega Cal
70 
Omega Cal std dev [±]
71 
Omega Arg
72 
Omega Arg std dev [±]
73 
CSC flag
(Calculated using seacarb afte...)
74 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
75 
CO2 std dev [±]
(Calculated using seacarb afte...)
76 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
77 
fCO2 std dev [±]
(Calculated using seacarb afte...)
78 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
79 
pCO2 std dev [±]
(Calculated using seacarb afte...)
80 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
81 
[HCO3]- std dev [±]
(Calculated using seacarb afte...)
82 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
83 
[CO3]2- std dev [±]
(Calculated using seacarb afte...)
84 
DIC [µmol/kg]
(Calculated using seacarb afte...)
85 
DIC std dev [±]
(Calculated using seacarb afte...)
86 
Omega Arg
(Calculated using seacarb afte...)
87 
Omega Arg std dev [±]
(Calculated using seacarb afte...)
88 
Omega Cal
(Calculated using seacarb afte...)
89 
Omega Cal std dev [±]
(Calculated using seacarb afte...)
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA8.2100.000.001.820.082.090.352.520.082.190.342.220.120.980.171.810.360.860.033.000.198.190.111.300.20253.464.480.091030.001980.212850.004260.022110.0033514.132.4743.102.531.960.640.220.010.120.01122500001000034.20.7824.500.508.200.027.931.502004.865.761650.6814.19216.2513.591407.8126.06236.6312.375.740.293.760.2086.380.42220.9514.07221.6614.121414.3726.17233.6710.561654.4116.743.720.245.660.36
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd8.298.752.501.360.251.750.262.200.201.850.262.100.090.860.831.470.630.800.203.330.049.130.041.500.31224.443.710.084470.004870.184350.004060.021860.0003915.922.4858.140.742.280.6010.130.060.470.00111600001000034.00.7124.550.038.200.017.930.642001.535.791646.497.21215.377.691403.4814.21236.807.245.770.143.770.1086.380.24221.028.16221.738.191413.4418.22232.857.601652.6711.873.710.215.650.31
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA7.898.752.501.740.051.810.062.440.051.910.062.130.020.860.261.700.430.940.203.210.028.250.051.600.37246.864.470.081930.002690.170900.003640.018860.0005817.753.6547.950.691.190.590.220.000.130.0199800001000034.20.7824.500.507.800.047.731.291998.209.991847.766.29677.9451.241715.8214.08112.389.572.720.231.780.15819.432.10672.7472.04674.9172.271714.4226.07112.769.881846.6019.271.790.182.730.27
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd7.897.502.881.140.191.410.222.020.081.510.221.960.090.760.831.340.600.920.023.760.059.870.052.220.34202.761.510.081940.004570.157530.004140.018030.0031928.892.8658.780.961.710.2410.120.020.680.0192600001000034.00.7124.550.037.790.047.800.701994.875.761847.709.52694.4356.301717.3516.34110.348.512.670.191.750.12819.932.13690.4873.66692.7173.901717.9324.10110.109.491847.9717.101.750.172.670.26
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA7.698.752.501.320.131.660.142.020.131.760.142.070.050.810.261.670.440.990.183.320.028.360.071.780.47237.982.580.077150.002730.141310.003890.018070.0008419.971.6748.881.341.140.500.230.010.140.0098900002000034.20.7824.500.507.610.037.563.071991.5415.261908.305.461100.4347.741800.472.0976.085.441.840.131.200.08831.582.511093.5885.761097.1086.041799.3519.7676.415.671907.3418.321.220.111.850.16
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd7.695.000.001.260.111.310.281.960.111.410.281.900.140.680.831.290.710.990.323.920.0510.950.072.250.34195.152.440.075590.005400.139290.003430.016010.0027029.214.1458.982.201.470.7710.140.040.700.0083600001000034.00.7124.550.037.600.037.070.671988.219.991904.382.481099.1782.551796.446.3276.296.341.840.141.210.09832.362.531121.0787.461124.6887.741800.8816.0574.525.361907.7614.141.190.101.810.15
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA7.497.502.881.220.161.390.061.920.161.490.061.950.020.800.391.610.361.150.213.640.059.330.051.990.48217.573.010.072050.005180.128930.004640.016820.0002820.715.1348.841.150.780.080.220.010.160.0183600001000034.20.7824.500.507.410.037.131.861988.219.991962.371.811761.4977.201860.791.2550.763.601.220.080.800.05851.813.981794.29136.191800.08136.631862.7713.3449.913.821964.4913.700.790.071.210.11
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd7.493.752.501.060.111.110.061.760.111.210.061.800.030.650.841.210.601.140.494.370.0511.500.242.390.35172.992.970.061410.003830.122710.004140.015540.0033929.424.2559.122.290.830.1310.350.290.850.0079300002000034.00.7124.550.037.400.036.830.591981.5515.261958.094.611799.82124.991856.514.0148.765.961.200.100.790.07852.964.031834.66139.421840.58139.871859.5516.9948.553.631961.0717.790.770.071.180.10
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA7.293.752.501.100.151.100.061.800.151.200.061.800.040.750.361.460.561.310.444.360.0511.510.082.360.15180.944.380.062130.003880.111950.003390.014200.0004826.861.4250.180.950.3213.000.220.010.180.0182600001000034.20.7824.500.507.210.026.861.531978.2219.982010.9612.102844.43105.551896.2613.7432.652.530.790.060.510.04883.654.482896.95151.612906.31152.101897.6119.8932.081.972013.3421.630.510.040.780.06
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd7.290.004.080.980.130.990.091.720.131.090.091.730.060.600.821.200.781.160.684.780.0512.860.102.470.36158.653.180.059540.002090.111590.004430.011350.0021629.622.7459.210.790.350.0810.180.011.050.0076400001000034.00.7124.550.037.200.036.570.351968.229.992000.340.572832.22198.861886.162.6232.632.870.780.060.510.04885.316.352955.32219.512964.86220.221889.9811.2831.142.372006.4314.050.500.040.760.07
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA7.091.254.781.020.191.010.061.780.191.110.061.740.040.660.241.390.431.360.354.590.0512.000.063.540.12170.502.240.055660.004940.107390.004790.011240.0010330.182.4350.112.110.190.090.210.000.190.0073400001000034.20.7824.500.507.030.026.702.631971.555.762067.913.964456.88193.121918.032.0221.311.520.510.030.330.228127.956.654431.34225.224445.68225.951917.796.4721.421.322067.1710.260.340.030.520.04
laboratoryScylla serratamarinespecies.orgurn:lsid:marinespecies.org:taxname:208814OA+Cd7.090.005.770.920.080.820.061.620.080.920.061.600.040.500.871.140.671.290.735.640.0915.460.273.770.19135.821.970.055420.002950.105990.002250.009800.0012531.813.3159.640.970.220.0810.180.001.310.0072700002000034.00.7124.550.037.010.026.430.211961.565.762060.763.154539.66215.331909.252.2520.641.380.500.030.330.028133.586.794627.11234.584642.08235.351910.576.3320.321.192064.4610.240.320.020.490.04