Citation:

PANGAEA.967652

Name: Seawater carbonate chemistry and freeze tolerant of subtidal Mytilus trossulus and subtidal M. galloprovincialis, and intertidal M. trossulus
Published: 2024-05-08
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Laboratory experiment; Mollusca; Mortality/Survival; Mytilus galloprovincialis; Mytilus trossulus; North Pacific; Other studied parameter or process; Single species; Temperate

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Abstract:

A full-factorial experiment was used to study whether ocean acidification increases mortality in subtidal Mytilus trossulus and subtidal M. galloprovincialis, and intertidal M. trossulus following sub-zero air temperature exposure. We examined physiological processes behind variation in freeze tolerance using 1H NMR metabolomics, analyses of fatty acids, and amino acid composition.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Zenodo (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-08.

Keyword(s):

Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Laboratory experiment; Mollusca; Mortality/Survival; Mytilus galloprovincialis; Mytilus trossulus; North Pacific; Other studied parameter or process; Single species; Temperate

Related to:

Thyrring, Jakob; MacLeod, Colin D; Marshall, Katie E; Kennedy, Jessica; Tremblay, Réjean; Harley, Christopher D G (2023): Ocean acidification increases susceptibility to sub-zero air temperatures in ecosystem engineers and limits poleward range shifts. eLife, 12, e81080, https://doi.org/10.7554/eLife.81080

Source:

Thyrring, Jakob; MacLeod, Colin D; Marshall, Katie E; Kennedy, Jessica; Tremblay, Réjean; Harley, Christopher D G (2023): Replication Data for: "Ocean acidification increases susceptibility to sub-zero air temperatures in ecosystem engineers and limit poleward range shifts" [dataset]. Zenodo, https://doi.org/10.5281/ZENODO.4454508

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 49.093333 * Median Longitude: -123.291000 * South-bound Latitude: 48.731000 * West-bound Longitude: -123.429000 * North-bound Latitude: 49.276000 * East-bound Longitude: -123.186000

Date/Time Start: 2019-12-08T00:00:00 * Date/Time End: 2019-12-10T00:00:00

Event(s):

Burrard_Inlet_JRVYC * Latitude: 49.276000 * Longitude: -123.186000 * Date/Time Start: 2019-12-08T00:00:00 * Date/Time End: 2019-12-10T00:00:00 * Method/Device: Experiment (EXP)

Burrard_Inlet_Tower_Beach * Latitude: 49.273000 * Longitude: -123.258000 * Date/Time Start: 2019-12-08T00:00:00 * Date/Time End: 2019-12-10T00:00:00 * Method/Device: Experiment (EXP)

Saltspring_Island * Latitude: 48.731000 * Longitude: -123.429000 * Date/Time Start: 2019-12-08T00:00:00 * Date/Time End: 2019-12-10T00:00:00 * Method/Device: Experiment (EXP)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Thyrring, Jakob
2	Type of study	Study type		Thyrring, Jakob
3	Species, unique identification	Species UID		Thyrring, Jakob
4	Species, unique identification (URI)	Species UID (URI)		Thyrring, Jakob
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Thyrring, Jakob
6	Type	Type		Thyrring, Jakob		Population
7	Treatment	Treat		Thyrring, Jakob
8	Temperature, air	TTT	°C	Thyrring, Jakob
9	Individuals	Ind	#	Thyrring, Jakob		Alive
10	Individuals	Ind	#	Thyrring, Jakob		Dead
11	Individuals	Ind	#	Thyrring, Jakob		Total
12	Sample ID	Sample ID		Thyrring, Jakob
13	Name	Name		Thyrring, Jakob		Amino acid
14	Amino acids	AA	mg/g	Thyrring, Jakob
15	Amino acids	AA	%	Thyrring, Jakob
16	Acetate, per wet mass	Acetate	µmol/g	Thyrring, Jakob		gill tissue
17	Acetoacetate	Acetoacetate	µmol/g	Thyrring, Jakob		gill tissue
18	Alanine	Ala	µmol/g	Thyrring, Jakob		gill tissue
19	Adenosine monophosphate, per wet mass	AMP	µmol/g	Thyrring, Jakob		gill tissue
20	Arginine	Arg	µmol/g	Thyrring, Jakob		gill tissue
21	Asparagine	Asn	µmol/g	Thyrring, Jakob		gill tissue
22	Aspartate	Aspartate	µmol/g	Thyrring, Jakob		gill tissue
23	Betaine	Betaine	µmol/g	Thyrring, Jakob		gill tissue
24	Glutamate	Glutamate	µmol/g	Thyrring, Jakob		gill tissue
25	Glycine	Gly	µmol/g	Thyrring, Jakob		gill tissue
26	Guanidoacetate	Guanidoacetate	µmol/g	Thyrring, Jakob		gill tissue
27	Lactate, per wet mass	Lactate	µmol/g	Thyrring, Jakob		gill tissue
28	Lysine	Lys	µmol/g	Thyrring, Jakob		gill tissue
29	Malate, per wet mass	Malate wm	µmol/g	Thyrring, Jakob		gill tissue
30	Malonate	Malonate	µmol/g	Thyrring, Jakob		gill tissue
31	Proline	Pro	µmol/g	Thyrring, Jakob		gill tissue
32	Succinate, per wet mass	Succinate	µmol/g	Thyrring, Jakob		gill tissue
33	Taurine	Tau	µmol/g	Thyrring, Jakob		gill tissue
34	Trimethylamine	TMA	µmol/kg	Thyrring, Jakob		gill tissue
35	Trimethylamine N-oxide	TMAO	µmol/g	Thyrring, Jakob		gill tissue
36	beta-Alanine	b-ala	µmol/g	Thyrring, Jakob		gill tissue
37	Mass	Mass	g	Thyrring, Jakob
38	Fatty acids	Fatty acids	%	Thyrring, Jakob		C10.0
39	Fatty acids	Fatty acids	%	Thyrring, Jakob		C11.0
40	Fatty acids	Fatty acids	%	Thyrring, Jakob		C12.0
41	Fatty acids	Fatty acids	%	Thyrring, Jakob		C13.0
42	Fatty acids	Fatty acids	%	Thyrring, Jakob		C14.0
43	Fatty acids	Fatty acids	%	Thyrring, Jakob		C14.1n5
44	Fatty acids	Fatty acids	%	Thyrring, Jakob		C15.0
45	Fatty acids	Fatty acids	%	Thyrring, Jakob		C15.1n7
46	Fatty acids	Fatty acids	%	Thyrring, Jakob		C16.0
47	Fatty acids	Fatty acids	%	Thyrring, Jakob		C16.1n7
48	Fatty acids	Fatty acids	%	Thyrring, Jakob		C17.0
49	Fatty acids	Fatty acids	%	Thyrring, Jakob		C17.1n7
50	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.0
51	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.1n9
52	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.2n6
53	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.3n6
54	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.3n3
55	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.0
56	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.1n9
57	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.2n6
58	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.3n6
59	Fatty acids	Fatty acids	%	Thyrring, Jakob		C21.0
60	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.4n6
61	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.3n3
62	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.5n3
63	Fatty acids	Fatty acids	%	Thyrring, Jakob		C22.0
64	Fatty acids	Fatty acids	%	Thyrring, Jakob		C22.1n9
65	Fatty acids	Fatty acids	%	Thyrring, Jakob		C22.2n6
66	Fatty acids	Fatty acids	%	Thyrring, Jakob		C23.0
67	Fatty acids	Fatty acids	%	Thyrring, Jakob		C24.0
68	Fatty acids	Fatty acids	%	Thyrring, Jakob		C22.6n3
69	Fatty acids	Fatty acids	%	Thyrring, Jakob		C24.1n9
70	Fatty acids	Fatty acids	%	Thyrring, Jakob		C15.0iso
71	Fatty acids	Fatty acids	%	Thyrring, Jakob		TMTD
72	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.0iso
73	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.1n7
74	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.1n11
75	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.2n
76	Fatty acids	Fatty acids	%	Thyrring, Jakob		Unknow_PUFA
77	Fatty acids	Fatty acids	%	Thyrring, Jakob		C18.4n3
78	Fatty acids	Fatty acids	%	Thyrring, Jakob		C22.2NMI
79	Fatty acids	Fatty acids	%	Thyrring, Jakob		PUFA1
80	Fatty acids	Fatty acids	%	Thyrring, Jakob		C17.0iso
81	Fatty acids	Fatty acids	%	Thyrring, Jakob		C20.1n7
82	Fatty acids	Fatty acids	%	Thyrring, Jakob		PUFA2
83	Fatty acids	Fatty acids	%	Thyrring, Jakob		C17.0ante
84	Fatty acids	Fatty acids	%	Thyrring, Jakob		PUFA3
85	Fatty acids	Fatty acids	%	Thyrring, Jakob		PUFA4
86	Saturated fatty acids of total fatty acids	SFA	%	Thyrring, Jakob
87	Monounsaturated fatty acids of total fatty acids	MUFA	%	Thyrring, Jakob
88	Polyunsaturated fatty acids of total fatty acids	PUFA	%	Thyrring, Jakob
89	Carbon, inorganic, dissolved	DIC	µmol/kg	Thyrring, Jakob
90	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Thyrring, Jakob
91	Temperature, water	Temp	°C	Thyrring, Jakob
92	Salinity	Sal		Thyrring, Jakob
93	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
94	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
95	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
96	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
97	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
98	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
99	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
100	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
101	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

13047 data points

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