Citation:

PANGAEA.967718

Name: Seawater carbonate chemistry and survival, metabolic traits and enzyme activities of multiple populations of the northern shrimp (Pandalus borealis)
Published: 2024-05-13
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Arthropoda; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mortality/Survival; North Atlantic; Other metabolic rates; Pandalus borealis; Respiration; Single species; Temperate; Temperature

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Abstract:

This study aimed at determining the physiological responses of the northern shrimp, Pandalus borealis, at different levels of biological organization and from four different geographic origins, exposed to elevated temperature and low pH to define its sensitivity to future ocean warming and acidification. Shrimp sampled within the northwest Atlantic were exposed for 30 days to combinations of three temperature (2, 6 or 10°C) and two pH levels (7.75 or 7.40). Survival, metabolic rates, whole-organism aerobic performance and cellular energetic capacity were assessed at the end of the exposure.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-13.

This project was further supported by:

- Strategic Program for Ecosystem- Based Research and Advice grant (SPERA)

- Aquatic Climate Change Adaptation Services Program grant (ACCASP)

- MITACS-Ouranos Accelerate grant

- Réal-Decoste Ouranos scholarship, Award no. 286109

Keyword(s):

Animalia; Arthropoda; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mortality/Survival; North Atlantic; Other metabolic rates; Pandalus borealis; Respiration; Single species; Temperate; Temperature

Related to:

Guscelli, Ella; Noisette, Fanny; Chabot, Denis; Blier, Pierre U; Hansen, Tanya; Cassista-Da Ros, Manon; Pepin, Pierre; Skanes, Katherine R; Calosi, Piero (2023): Northern shrimp from multiple origins show similar sensitivity to global change drivers, but different cellular energetic capacity. Journal of Experimental Biology, 226(16), jeb245400, https://doi.org/10.1242/jeb.245400

Source:

Guscelli, Ella; Noisette, Fanny; Chabot, Denis; Blier, Pierre U; Hansen, Tanya; Cassista-Da Ros, Manon; Pepin, Pierre; Skanes, Katherine R; Calosi, Piero (2024): Survival, metabolic traits and enzyme activities of multiple populations of the northern shrimp (Pandalus borealis) exposed to global change drivers. PANGAEA, https://doi.org/10.1594/PANGAEA.966797

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Vulnerability of Northern Shrimp Populations to Climate and Global Changes Along the East Coast of Canada - From Natural Resource to Coastal Communities (554023)

Funding:

Natural Sciences and Engineering Research Council (NSERC), grant/award no. FRQNT PBEEE 289597 : Research Support for New Academics (FRQNT)

Natural Sciences and Engineering Research Council (NSERC), grant/award no. RGPIN-2015-06500 : Discovery Grants Program - Individual

Natural Sciences and Engineering Research Council (NSERC), grant/award no. RGPIN-2019-05992 : Discovery Grants program - Individual

Natural Sciences and Engineering Research Council (NSERC), grant/award no. RGPIN-2020-05627 : Research Support for New Academics (FRQNT)

Coverage:

Median Latitude: 48.749750 * Median Longitude: -60.350000 * South-bound Latitude: 45.383000 * West-bound Longitude: -68.583000 * North-bound Latitude: 50.733000 * East-bound Longitude: -54.267000

Date/Time Start: 2018-05-15T00:00:00 * Date/Time End: 2019-11-15T00:00:00

Event(s):

EC_2019-07 (P. borealis from Esquiman Channel) * Latitude: 50.733000 * Longitude: -57.483000 * Date/Time: 2019-07-15T00:00:00 * Location: Northwest Atlantic * Method/Device: Shrimp trawl, commercial

ESS_2019-02 (P. borealis from Eastern Scotian Shelf) * Latitude: 45.383000 * Longitude: -61.067000 * Date/Time: 2019-02-15T00:00:00 * Location: Northwest Atlantic * Method/Device: Fishing trap

NNC_2019-11 (P. borealis from Northeast Newfoundland Coast) * Latitude: 50.300000 * Longitude: -54.267000 * Date/Time: 2019-11-15T00:00:00 * Location: Northwest Atlantic * Method/Device: Shrimp trawl, commercial

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Guscelli, Ella
2	Optional event label	Event 2		Guscelli, Ella
3	Latitude of event	Latitude		Guscelli, Ella
4	Longitude of event	Longitude		Guscelli, Ella
5	Type of study	Study type		Guscelli, Ella
6	Species, unique identification	Species UID		Guscelli, Ella
7	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Guscelli, Ella
8	Species, unique identification (URI)	Species UID (URI)		Guscelli, Ella
9	Sex	Sex		Guscelli, Ella
10	Treatment: temperature	T:temp	°C	Guscelli, Ella
11	Treatment: pH	T:pH		Guscelli, Ella
12	Tank number	Tank No		Guscelli, Ella
13	Date/time start, experiment	Date/time start exp		Guscelli, Ella
14	Date/time end, experiment	Date/time end exp		Guscelli, Ella
15	Experiment duration	Exp duration	days	Guscelli, Ella
16	Number of individuals, start experiment	Ind No start	#	Guscelli, Ella	Counting
17	Number of individuals, end experiment	Ind No end	#	Guscelli, Ella	Counting
18	Survival	Survival	%	Guscelli, Ella	Calculated
19	Individual ID	Ind ID		Guscelli, Ella
20	Day of experiment	DOE	day	Guscelli, Ella		Respirometry start
21	Day of experiment	DOE	day	Guscelli, Ella		Respirometry end
22	Wet mass	Wet m	g	Guscelli, Ella	Digital scale, A&D, Mf-300, accuracy ±0.001 g
23	Metabolic rate of oxygen, standard	SMR O2	mg/kg/h	Guscelli, Ella	Intermittent-flow respirometry	Calculated from oxygen uptake measurements
24	Metabolic rate of oxygen, maximum	MMR O2	mg/kg/h	Guscelli, Ella	Intermittent-flow respirometry	Calculated from oxygen uptake measurements
25	Aerobic scope of oxygen	Aerobic scope	mg/kg/h	Guscelli, Ella	Intermittent-flow respirometry	Calculated from oxygen uptake measurements
26	Day of experiment	DOE	day	Guscelli, Ella		After end of respirometry
27	Citrate synthase activity, unit per protein mass	CS/prot	U/g	Guscelli, Ella	UV/Vis Spectrophotometer, Agilent Technologies, Cary 100 UV-Vis
28	Cytochrome c oxidase activity, unit per protein mass	COX/prot	U/g	Guscelli, Ella	UV/Vis Spectrophotometer, Agilent Technologies, Cary 100 UV-Vis
29	Lactate dehydrogenase activity, unit per protein mass	LDH/prot	U/g	Guscelli, Ella	UV/Vis Spectrophotometer, Agilent Technologies, Cary 100 UV-Vis
30	Proteins, in tissue	PTR	mg/g	Guscelli, Ella	UV/VIS Microplate Spectrophotometer, Perkin Elmer
31	Temperature, water	Temp	°C	Guscelli, Ella
32	Temperature, water, standard deviation	Temp std dev	±	Guscelli, Ella
33	pH	pH		Guscelli, Ella	Potentiometric	total scale
34	pH, standard deviation	pH std dev	±	Guscelli, Ella	Potentiometric	total scale
35	Oxygen saturation	O2 sat	%	Guscelli, Ella	Oxygen meter, PyroScience, OXROB10	Relative to air saturation
36	Oxygen saturation, standard error	O2 sat std e	±	Guscelli, Ella
37	Salinity	Sal		Guscelli, Ella
38	Salinity, standard deviation	Sal std dev	±	Guscelli, Ella
39	Alkalinity, total	AT	µmol/kg	Guscelli, Ella	Potentiometric titration
40	Alkalinity, total, standard deviation	AT std dev	±	Guscelli, Ella	Potentiometric titration
41	Carbon, inorganic, dissolved	DIC	µmol/kg	Guscelli, Ella	Calculated using seacarb
42	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Guscelli, Ella	Calculated using seacarb
43	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Guscelli, Ella	Calculated using seacarb
44	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Guscelli, Ella	Calculated using seacarb
45	Bicarbonate ion	[HCO3]-	µmol/kg	Guscelli, Ella	Calculated using seacarb
46	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Guscelli, Ella	Calculated using seacarb
47	Carbonate ion	[CO3]2-	µmol/kg	Guscelli, Ella	Calculated using seacarb
48	Carbonate ion, standard deviation	[CO3]2- std dev	±	Guscelli, Ella	Calculated using seacarb
49	Calcite saturation state	Omega Cal		Guscelli, Ella	Calculated using seacarb
50	Calcite saturation state, standard deviation	Omega Cal std dev	±	Guscelli, Ella	Calculated using seacarb
51	Aragonite saturation state	Omega Arg		Guscelli, Ella	Calculated using seacarb
52	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Guscelli, Ella	Calculated using seacarb
53	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
55	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
56	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
58	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
59	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
61	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

22752 data points

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