Citation:

PANGAEA.939214

Name: Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes
Published: 2021-12-09
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Candidatus Thioglobus; intraoceanic arc; metabolic flexibility; Metagenome; metatranscriptome; microbial ecology; volcanic arc

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Published: 2021-12-09 • DOI registered: 2022-01-07

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Abstract:

Chemistry and microbial cell numbers of two bathy- (Brothers volcano; BrV-cone and northwest caldera; NWC) and a mesopelagic (Macauley volcano; McV) plumes on the Kermadec intra-oceanic arc in the South Pacific Ocean. The microbial cell numbers were determined using Catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). Chemical measurements of DFe, DOC, TDN, PO4, NOx and SPE-DOC in the plumes are given.

Keyword(s):

Candidatus Thioglobus; intraoceanic arc; metabolic flexibility; Metagenome; metatranscriptome; microbial ecology; volcanic arc

Related to:

Dede, Bledina; Hansen, Christian T; Neuholz, René; Schnetger, Bernhard; Kleint, Charlotte; Walker, Sharon L; Bach, Wolfgang; Amann, Rudolf; Meyerdierks, Anke (2022): Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. The ISME Journal, https://doi.org/10.1038/s41396-022-01195-x

Further details:

Specifications for CARD-FISH probes. dede_2021_ISME_PangaeaSubmission_probe.txt

Funding:

Bundesministerium für Bildung und Forschung, Bonn (BMBF), grant/award no. 03G0253: Geosphere-Biosphere Interactions

Coverage:

Median Latitude: -32.279008 * Median Longitude: -179.837148 * South-bound Latitude: -35.258350 * West-bound Longitude: 178.777120 * North-bound Latitude: -28.259600 * East-bound Longitude: -178.433730

Date/Time Start: 2016-12-24T22:01:00 * Date/Time End: 2017-01-16T10:13:00

Minimum DEPTH, water: 195 m * Maximum DEPTH, water: 1750 m

Event(s):

SO253_1-1 * Latitude: -28.259600 * Longitude: -179.075180 * Date/Time: 2016-12-24T22:01:00 * Elevation: -2039.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

SO253_4-1 * Latitude: -30.209320 * Longitude: -178.433730 * Date/Time: 2016-12-26T05:28:00 * Elevation: -575.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

SO253_10-1 * Latitude: -30.214650 * Longitude: -178.443570 * Date/Time: 2016-12-27T10:02:00 * Elevation: -461.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Dede, Bledina
2	Latitude of event	Latitude		Dede, Bledina
3	Longitude of event	Longitude		Dede, Bledina
4	Date/Time of event	Date/Time		Dede, Bledina
5	DEPTH, water	Depth water	m	Dede, Bledina		Geocode
6	Sample ID	Sample ID		Dede, Bledina
7	Origin	Origin		Dede, Bledina		Source
8	Type	Type		Dede, Bledina		Cast type
9	Location	Location		Dede, Bledina		Plume area
10	Turbidity (Nephelometric turbidity unit)	Turbidity	NTU	Dede, Bledina	CTD, SEA-BIRD SBE 9 plus
11	Temperature, water	Temp	°C	Dede, Bledina	CTD, SEA-BIRD SBE 9 plus
12	pH	pH		Dede, Bledina
13	Oxygen	O2	µmol/kg	Dede, Bledina
14	Iron, dissolved	Fe diss	nmol/l	Dede, Bledina	High Resolution Sector Field Inductively Coupled Plasma Mass Spectrometry (HR-SF-ICP-MS)
15	Carbon, organic, dissolved	DOC	µmol/l	Dede, Bledina	High temperature catalytic combustion
16	Nitrogen, total dissolved	TDN	µmol/l	Dede, Bledina	High temperature catalytic combustion
17	Phosphate	[PO4]3-	µmol/l	Dede, Bledina	Colorimetric analysis
18	Nitrogen oxide	NOx	µmol/l	Dede, Bledina	Colorimetric analysis
19	Hydrogen sulfide	H2S	µmol/l	Dede, Bledina	Modeled
20	Carbon, organic, dissolved, extracted	DOC extr	µmol/l	Dede, Bledina	Solid-phase extracted (Dittmer etal, 2008) (SPE)	solid-phase extractable dissolved organic carbon
21	Analysis	Analysis		Dede, Bledina		CARD FISH
22	Analysis	Analysis		Dede, Bledina		Metagenome
23	Analysis	Analysis		Dede, Bledina		Metatranscriptome
24	Prokaryotic cell abundance	P cell abund	#/cm³	Dede, Bledina
25	Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe	EUB338 I-III	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
26	Archaea, targed with ARCH915 oligonucleotide FISH-probe	ARCH915	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
27	Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe	Gam42a	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
28	Gammaproteobacteria, targed with the SUP05_1241 oligonucleotide FISH-probe	SUP05_1241 SUP05 cluster	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

526 data points

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