Citation:

PANGAEA.939214

Name: Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes
Published: 2021-12-09
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Candidatus Thioglobus; intraoceanic arc; metabolic flexibility; Metagenome; metatranscriptome; microbial ecology; volcanic arc

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Published: 2021-12-09 • DOI registered: 2022-01-07

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Abstract:

Chemistry and microbial cell numbers of two bathy- (Brothers volcano; BrV-cone and northwest caldera; NWC) and a mesopelagic (Macauley volcano; McV) plumes on the Kermadec intra-oceanic arc in the South Pacific Ocean. The microbial cell numbers were determined using Catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). Chemical measurements of DFe, DOC, TDN, PO4, NOx and SPE-DOC in the plumes are given.

Keyword(s):

Candidatus Thioglobus; intraoceanic arc; metabolic flexibility; Metagenome; metatranscriptome; microbial ecology; volcanic arc

Related to:

Dede, Bledina; Hansen, Christian T; Neuholz, René; Schnetger, Bernhard; Kleint, Charlotte; Walker, Sharon L; Bach, Wolfgang; Amann, Rudolf; Meyerdierks, Anke (2022): Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. The ISME Journal, https://doi.org/10.1038/s41396-022-01195-x

Further details:

Specifications for CARD-FISH probes. dede_2021_ISME_PangaeaSubmission_probe.txt

Funding:

Bundesministerium für Bildung und Forschung, Bonn (BMBF), grant/award no. 03G0253: Geosphere-Biosphere Interactions

Coverage:

Median Latitude: -32.279008 * Median Longitude: -179.837148 * South-bound Latitude: -35.258350 * West-bound Longitude: 178.777120 * North-bound Latitude: -28.259600 * East-bound Longitude: -178.433730

Date/Time Start: 2016-12-24T22:01:00 * Date/Time End: 2017-01-16T10:13:00

Minimum DEPTH, water: 195 m * Maximum DEPTH, water: 1750 m

Event(s):

SO253_1-1 * Latitude: -28.259600 * Longitude: -179.075180 * Date/Time: 2016-12-24T22:01:00 * Elevation: -2039.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

SO253_4-1 * Latitude: -30.209320 * Longitude: -178.433730 * Date/Time: 2016-12-26T05:28:00 * Elevation: -575.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

SO253_10-1 * Latitude: -30.214650 * Longitude: -178.443570 * Date/Time: 2016-12-27T10:02:00 * Elevation: -461.0 m * Location: South Pacific Ocean * Campaign: (HYDROTHERMADEC) * Basis: * Method/Device: (CTD-RO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Dede, Bledina
2	Latitude of event	Latitude		Dede, Bledina
3	Longitude of event	Longitude		Dede, Bledina
4	Date/Time of event	Date/Time		Dede, Bledina
5	DEPTH, water	Depth water	m	Dede, Bledina		Geocode
6	Sample ID	Sample ID		Dede, Bledina
7	Origin	Origin		Dede, Bledina		Source
8	Type	Type		Dede, Bledina		Cast type
9	Location	Location		Dede, Bledina		Plume area
10	Turbidity (Nephelometric turbidity unit)	Turbidity	NTU	Dede, Bledina	CTD, SEA-BIRD SBE 9 plus
11	Temperature, water	Temp	°C	Dede, Bledina	CTD, SEA-BIRD SBE 9 plus
12	pH	pH		Dede, Bledina
13	Oxygen	O2	µmol/kg	Dede, Bledina
14	Iron, dissolved	Fe diss	nmol/l	Dede, Bledina	High Resolution Sector Field Inductively Coupled Plasma Mass Spectrometry (HR-SF-ICP-MS)
15	Carbon, organic, dissolved	DOC	µmol/l	Dede, Bledina	High temperature catalytic combustion
16	Nitrogen, total dissolved	TDN	µmol/l	Dede, Bledina	High temperature catalytic combustion
17	Phosphate	[PO4]3-	µmol/l	Dede, Bledina	Colorimetric analysis
18	Nitrogen oxide	NOx	µmol/l	Dede, Bledina	Colorimetric analysis
19	Hydrogen sulfide	H2S	µmol/l	Dede, Bledina	Modeled
20	Carbon, organic, dissolved, extracted	DOC extr	µmol/l	Dede, Bledina	Solid-phase extracted (Dittmer etal, 2008) (SPE)	solid-phase extractable dissolved organic carbon
21	Analysis	Analysis		Dede, Bledina		CARD FISH
22	Analysis	Analysis		Dede, Bledina		Metagenome
23	Analysis	Analysis		Dede, Bledina		Metatranscriptome
24	Prokaryotic cell abundance	P cell abund	#/cm³	Dede, Bledina
25	Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe	EUB338 I-III	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
26	Archaea, targed with ARCH915 oligonucleotide FISH-probe	ARCH915	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
27	Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe	Gam42a	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
28	Gammaproteobacteria, targed with the SUP05_1241 oligonucleotide FISH-probe	SUP05_1241 SUP05 cluster	%	Dede, Bledina	Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

526 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Date/Time	5 Depth water [m]	6 Sample ID	7 Origin (Source)	8 Type (Cast type)	9 Location (Plume area)	10 Turbidity [NTU] (CTD, SEA-BIRD SBE 9 plus)	11 Temp [°C] (CTD, SEA-BIRD SBE 9 plus)	12 pH	13 O2 [µmol/kg]	14 Fe diss [nmol/l] (High Resolution Sector Field ...)	15 DOC [µmol/l] (High temperature catalytic co...)	16 TDN [µmol/l] (High temperature catalytic co...)	17 [PO4]3- [µmol/l] (Colorimetric analysis)	18 NOx [µmol/l] (Colorimetric analysis)	19 H2S [µmol/l] (Modeled)	20 DOC extr [µmol/l] (solid-phase extractable disso...)	21 Analysis (CARD FISH)	22 Analysis (Metagenome)	23 Analysis (Metatranscriptome)	24 P cell abund [#/cm³]	25 EUB338 I-III [%] (Catalysed reporter deposition...)	26 ARCH915 [%] (Catalysed reporter deposition...)	27 Gam42a [%] (Catalysed reporter deposition...)	28 SUP05_1241 SUP05 cluster [%] (Catalysed reporter deposition...)
SO253_1-1	-28.2596	-179.0752	2016-12-24T22:01:00	402	01CTD_b19	Background	Vertical	Backg.		13.6		184.20								-	-	-
SO253_79-1	-35.2584	178.7771	2017-01-16T10:13:00	1499	79CTD_b6	Background	Vertical	Backg.		3.8	7.80	159.90		172	39				20.00	-	-	-
SO253_4-1	-30.2093	-178.4337	2016-12-26T05:28:00	248	04CTD_b2	Macauley	Tow-yo	Plume	0.0534	15.1	8.00	186.70	7.20	177	10	0.400	7.100	65.7	2.78	+	-	-	127018.66260	43	23	6	10
SO253_4-1	-30.2093	-178.4337	2016-12-26T05:28:00	221	04CTD_b4	Macauley	Tow-yo	Above	0.0021	15.6	8.00	188.30	3.80	194	10	0.400	5.900	34.3	31.00	+	-	-	112208.59340	45	25	2	0
SO253_4-1	-30.2093	-178.4337	2016-12-26T05:28:00	287	04CTD_b6	Macauley	Tow-yo	Max	0.2021	15.0	7.90	178.70	126.00	199	11	0.500	8.100	1148.8	19.80	+	+	+	117863.27360	29	19	4	14
SO253_4-1	-30.2093	-178.4337	2016-12-26T05:28:00	351	04CTD_b8	Macauley	Tow-yo	Below	0.0055	13.0	8.00	187.10	6.00	169	14	0.700	12.000	54.4	26.40	+	-	-	107158.99130	44	21	4	2
SO253_4-1	-30.2093	-178.4337	2016-12-26T05:28:00	250	04CTD_b10	Macauley	Tow-yo	No sig.	0.0024	15.0	8.00	187.10	3.80	162	10	0.500	7.000	34.3	26.70	+	-	-	118306.63990	31	22	6	0
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	253	10CTD_b2	Macauley	Tow-yo	Plume	0.0345	15.1	8.00	187.70	9.50			0.500	7.000	87.1		+	+	-	93619.85388	52	21	4	23
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	274	10CTD_b4	Macauley	Tow-yo	Plume	0.2777	14.8	7.80	183.00	22.20	291	11	0.600	7.400	202.3	27.00	+	+	+	147050.63710	37	21	3	23
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	195	10CTD_b10	Macauley	Tow-yo	Above	0.0227	16.2	7.90	188.10	6.10	299	9	0.300	5.500	55.2	24.00	+	+	-	142098.58210	43	25	1	0
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	264	10CTD_b12	Macauley	Tow-yo	Plume	0.0654	14.9	7.90	186.80	5.50			0.500	6.800	50.0		+	+	-	115743.58550	43	22	3	5
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	274	10CTD_b17	Macauley	Tow-yo	Weak	0.0260	14.9	7.90	186.80	12.80	257	17	0.900	8.500		23.00	+	-	-	119147.54330	36	21	3	2
SO253_10-1	-30.2146	-178.4436	2016-12-27T10:02:00	276	10CTD_b19	Macauley	Tow-yo	No sig	0.0186	14.8	7.90	186.40	12.50	242	11	0.500	8.100		28.00	+	-	-	119524.12580	44	24	2	1
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1335	49CTD_b2	Brothers NW Caldera	Tow-yo	Plume	0.0208	4.2	7.80	168.30	6.00	45	33	2.200	31.900	2.2	22.00	+	-	-	31393.19767	65	10	5	8
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1496	49CTD_b4	Brothers NW Caldera	Tow-yo	Plume	0.0107	3.3	7.80	155.04	9.60	43	35	2.200	31.400	3.5	19.00	-	-	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1229	49CTD_b6	Brothers upper cone	Tow-yo	Above	0.0118	4.9	7.80	178.30	20.60	47	31	2.100	28.100	7.4	20.00	-	-	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1538	49CTD_b8	Brothers NW Caldera	Tow-yo	Plume	0.1103	3.4	7.80	156.00	15.30	44	34	2.300	31.300	5.5	20.00	-	-	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1308	49CTD_b10	Brothers lower cone	Tow-yo	Plume	0.0042	4.5	7.80	171.10	11.70	44	33	2.200	30.800	4.2	20.00	-	+	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1280	49CTD_b12	Brothers lower cone	Tow-yo	Plume	0.0136	4.6	7.80	171.60	25.10	44	32	2.100	29.700	9.0	20.00	-	-	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1304	49CTD_b16	Brothers lower cone	Tow-yo	Plume	0.0226	4.3	7.60	167.60	18.80	48	33	2.100	29.600	6.8	23.00	-	+	-
SO253_49-1	-34.8627	179.0898	2017-01-08T08:08:00	1556	49CTD_b18	Brothers NW Caldera	Tow-yo	Weak	0.0049	3.2	8.02	153.40	1.73	59	10	0.500	5.500	0.6	24.00	-	-	-
SO253_54-1	-34.8694	179.0626	2017-01-09T11:12:00	1750	54CTD_b4	Brothers NW Caldera	Vertical	Plume	0.0466	3.3	7.70	153.10	15.50	42	35	2.200	35.000	5.6	20.00	+-	-	-	31058.54937	75	16	0	56
SO253_54-1	-34.8694	179.0626	2017-01-09T11:12:00	1560	54CTD_b8	Brothers NW Caldera	Vertical	Plume	0.1222	3.4	7.80	154.70	34.60	42	34	2.200	35.000	12.5	19.00	+	+	+	43214.50280	80	8	1	67
SO253_54-1	-34.8694	179.0626	2017-01-09T11:12:00	1440	54CTD_b12	Brothers NW Caldera	Vertical	Plume	0.0475	3.5	7.80	157.80	12.70	44	35	2.200	34.700	4.6	19.00	+	+	+	38250.22256	59	17	1	26
SO253_54-1	-34.8694	179.0626	2017-01-09T11:12:00	1371	54CTD_b15	Brothers NW Caldera	Vertical	Between	0.0025	3.8	7.80	152.50	6.80	42	34	2.200	34.300	2.4	20.00	+	-	-	26542.56794	52	19	2	9
SO253_54-1	-34.8694	179.0626	2017-01-09T11:12:00	1229	54CTD_b18	Brothers upper cone	Vertical	Above	0.0124	4.6	7.80	147.70	22.20	46	33	2.080	32.300	8.0	21.00	-	-	-