Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Ocean Acidification, International Coordination Centre (2015): Data compilation on the biological response to ocean acidification: environmental and experimental context of data sets and related literature. PANGAEA, https://doi.org/10.1594/PANGAEA.149999, Supplement to: Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Abstract:
The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation hosted at the data publisher PANGAEA was initiated in 2008 and is updated on a regular basis (doi:10.1594/PANGAEA.149999). By January 2015, a total of 581 data sets (over 4 000 000 data points) from 539 papers had been archived. Here we present the developments of this data compilation five years since its first description by Nisumaa et al. (2010). Most of study sites from which data archived are still in the Northern Hemisphere and the number of archived data from studies from the Southern Hemisphere and polar oceans are still relatively low. Data from 60 studies that investigated the response of a mix of organisms or natural communities were all added after 2010, indicating a welcomed shift from the study of individual organisms to communities and ecosystems. The initial imbalance of considerably more data archived on calcification and primary production than on other processes has improved. There is also a clear tendency towards more data archived from multifactorial studies after 2010. For easier and more effective access to ocean acidification data, the ocean acidification community is strongly encouraged to contribute to the data archiving effort, and help develop standard vocabularies describing the variables and define best practices for archiving ocean acidification data.
Related to:
Aberle, Nicole; Schulz, Kai Georg; Stuhr, Annegret; Malzahn, Arne Michael; Ludwig, Andrea; Riebesell, Ulf (2013): High tolerance of microzooplankton to ocean acidification in an Arctic coastal plankton community. Biogeosciences, 10(3), 1471-1481, https://doi.org/10.5194/bg-10-1471-2013
Agostini, Sylvain; Fujimura, Hiroyuki; Higuchi, Tomihiko; Yuyama, Ikuko; Casareto, Beatriz E; Suzuki, Yoshimi; Nakano, Yoshiyuki (2013): The effects of thermal and high-CO2 stresses on the metabolism and surrounding microenvironment of the coral Galaxea fascicularis. Comptes Rendus Biologies, 336(8), 384-391, https://doi.org/10.1016/j.crvi.2013.07.003
Albright, R; Mason, B; Langdon, Chris (2008): Effect of aragonite saturation state on settlement and post-settlement growth of Porites astreoides larvae. Coral Reefs, 27(3), 485-490, https://doi.org/10.1007/s00338-008-0392-5
Alexandre, Ana; Silva, João; Buapet, Pimchanok; Björk, Mats; Santos, Rui (2012): Effects of CO2 enrichment on photosynthesis, growth, and nitrogen metabolism of the seagrass Zostera noltii. Ecology and Evolution, 2(10), 2625-2635, https://doi.org/10.1002/ece3.333
Allan, Bridie J M; Domenici, Paolo; McCormick, Mark I; Watson, Sue-Ann; Munday, Philip L (2013): Elevated CO2 Affects Predator-Prey Interactions through Altered Performance. PLoS ONE, 8(3), e58520, https://doi.org/10.1371/journal.pone.0058520.t002
Allan, Bridie J M; Miller, Garielle M; McCormick, Mark I; Domenici, Paolo; Munday, Philip L (2014): Parental effects improve escape performance of juvenile reef fish in a high-CO2 world. Proceedings of the Royal Society B-Biological Sciences, 281(1777), 20132179-20132179, https://doi.org/10.1098/rspb.2013.2179
Allen, Katherine A; Hönish, Bärbel; Eggins, Stephen M; Yu, Jimin; Spero, Howard J; Elderfield, Henry (2011): Controls on boron incorporation in cultured tests of the planktic foraminifer Orbulina universa. Earth and Planetary Science Letters, 309(3-4), 291-301, https://doi.org/10.1016/j.epsl.2011.07.010
Allgaier, Martin; Riebesell, Ulf; Vogt, Meike; Thyrhaug, Runar; Grossart, Hans-Peter (2008): Coupling of heterotrophic bacteria to phytoplankton bloom development at different pCO2 levels: a mesocosm study. Biogeosciences, 5(4), 1007-1022, https://doi.org/10.5194/bg-5-1007-2008
Allison, Nicola; Cohen, Itay; Finch, Adrian A; Erez, Jonathan; EMIF (2011): Controls on Sr/Ca and Mg/Ca in scleractinian corals: The effects of Ca-ATPase and transcellular Ca channels on skeletal chemistry. Geochimica et Cosmochimica Acta, 75(21), 6350-6360, https://doi.org/10.1016/j.gca.2011.08.012
Alsterberg, Christian; Eklöf, Johan S; Gamfeldt, Lars; Havenhand, Jonathan N; Sundbäck, Kristina (2013): Consumers mediate the effects of experimental ocean acidification and warming on primary producers. Proceedings of the National Academy of Sciences, 110(21), 8603-8608, https://doi.org/10.1073/pnas.1303797110
Andersen, Sissel; Grefsrud, E S; Harboe, T (2013): Effect of increased pCO2 level on early shell development in great scallop (Pecten maximus Lamarck) larvae. Biogeosciences, 10(10), 6161-6184, https://doi.org/10.5194/bg-10-6161-2013
Andersson, Andreas J; Kuffner, Ilsa B; Mackenzie, Fred T; Jokiel, Paul L; Rodgers, Ku'ulei; Tan, A (2009): Net Loss of CaCO3 from a subtropical calcifying community due to seawater acidification: mesocosm-scale experimental evidence. Biogeosciences, 6(8), 1811-1823, https://doi.org/10.5194/bg-6-1811-2009
Andersson, Andreas J; Mackenzie, Fred T; Bates, Nicolas R (2008): Life on the margin: implications of ocean acidification on Mg-calcite, high latitude and cold-water marine calcifiers. Marine Ecology Progress Series, 373, 265-273, https://doi.org/10.3354/meps07639
Anlauf, Holger; D'Croz, Luis; O'Dea, Aaron (2011): A corrosive concoction: The combined effects of ocean warming and acidification on the early growth of a stony coral are multiplicative. Journal of Experimental Marine Biology and Ecology, 397(1), 13-20, https://doi.org/10.1016/j.jembe.2010.11.009
Anthony, Kenneth R N; Kline, David I; Diaz-Pulido, Guillermo; Dove, Sophie; Hoegh-Guldberg, Ove (2008): Ocean acidification causes bleaching and productivity loss in coral reef builders. Proceedings of the National Academy of Sciences of the United States of America, 105(45), 7442-7446, https://doi.org/10.1073/pnas.0804478105
Antia, Avan N; Suffrian, K; Holste, Linda; Müller, Marius N; Nejstgaard, Jens C; Simonelli, P; Carotenuto, Y; Putzeys, S (2008): Dissolution of coccolithophorid calcite by microzooplankton and copepod grazing. Biogeosciences Discussions, 5(1), 1-23, https://doi.org/10.5194/bgd-5-1-2008
Apostolaki, Eugenia T; Vizzini, Salvatrice; Hendriks, Iris; Olsen, Ylva (2014): Seagrass ecosystem response to long-term high CO2 in a Mediterranean volcanic vent. Marine Environmental Research, 99, 9-15, https://doi.org/10.1016/j.marenvres.2014.05.008
Appelhans, Yasmin S; Thomsen, Jörn; Opitz, Stephan; Pansch, Christian; Melzner, Frank; Wahl, Martin (2014): Juvenile sea stars exposed to acidification decrease feeding and growth with no acclimation potential. Marine Ecology Progress Series, 509, 227-239, https://doi.org/10.3354/meps10884
Archer, S D; Kimmance, S A; Stephens, J A; Hopkins, Frances E; Bellerby, Richard G J; Schulz, Kai Georg; Piontek, Judith; Engel, Anja (2013): Contrasting responses of DMS and DMSP to ocean acidification in Arctic waters. Biogeosciences, 10(3), 1893-1908, https://doi.org/10.5194/bg-10-1893-2013
Arnold, Thomas; Freundlich, Grace; Weilnau, Taylor; Verdi, Arielle; Tibbetts, Ian R (2014): Impacts of groundwater discharge at Myora Springs (North Stradbroke Island, Australia) on the phenolic metabolism of eelgrass, Zostera muelleri, and grazing by the juvenile rabbitfish, Siganus fuscescens. PLoS ONE, 9(8), e104738, https://doi.org/10.1371/journal.pone.0104738.t003
Arnold, Thomas; Mealey, Christopher; Leahey, Hannah; Miller, A Whitman; Hall-Spencer, Jason M; Milazzo, Marco; Maers, Kelly (2012): Ocean Acidification and the Loss of Phenolic Substances in Marine Plants. PLoS ONE, 7(4), e35107, https://doi.org/10.1371/journal.pone.0035107.t004
Arnosti, Carol; Grossart, Hans-Peter; Mühling, M; Joint, Ian; Passow, Uta (2011): Dynamics of extracellular enzyme activities in seawater under changed atmospheric pCO2: a mesocosm investigation. Aquatic Microbial Ecology, 64(3), 285-298, https://doi.org/10.3354/ame01522
Asnaghi, Valentina; Chiantore, Mariachiara; Mangialajo, Luisa; Gazeau, Frédéric; Francour, Patrice; Alliouane, Samir; Gattuso, Jean-Pierre (2013): Cascading Effects of Ocean Acidification in a Rocky Subtidal Community. PLoS ONE, 8(4), e61978, https://doi.org/10.1371/journal.pone.0061978.t004
Asnaghi, Valentina; Mangialajo, Luisa; Gattuso, Jean-Pierre; Francour, Patrice; Privitera, Davide; Chiantore, Mariachiara (2014): Effects of ocean acidification and diet on thickness and carbonate elemental composition of the test of juvenile sea urchins. Marine Environmental Research, 93, 78-84, https://doi.org/10.1016/j.marenvres.2013.08.005
Bach, Lennart Thomas; Mackinder, Luke C M; Schulz, Kai Georg; Wheeler, Glen; Schroeder, Declan C; Brownlee, Colin; Riebesell, Ulf (2013): Dissecting the impact of CO2 and pH on the mechanisms of photosynthesis and calcification in the coccolithophore Emiliania huxleyi. New Phytologist, 199(1), 121-134, https://doi.org/10.1111/nph.12225
Bach, Lennart Thomas; Riebesell, Ulf; Schulz, Kai Georg (2011): Distinguishing between the effects of ocean acidification and ocean carbonation in the coccolithophore Emiliania huxleyi. Limnology and Oceanography, 56(6), 2040-2050, https://doi.org/10.4319/lo.2011.56.6.2040
Baggini, Cecilia; Salomidi, Maria; Voutsinas, Emanuela; Bray, Laura; Krasakopoulou, Evangelia; Hall-Spencer, Jason M (2014): Seasonality Affects Macroalgal Community Response to Increases in pCO2. PLoS ONE, 9(9), e106520, https://doi.org/10.1371/journal.pone.0106520
Barcelos e Ramos, Joana; Biswas, Haimanti; Schulz, Kai Georg; LaRoche, Julie; Riebesell, Ulf (2007): Effect of rising atmospheric carbon dioxide on the marine nitrogen fixer Trichodesmium. Global Biogeochemical Cycles, 21, https://doi.org/10.1029/2006GB002898
Barcelos e Ramos, Joana; Müller, Marius N; Riebesell, Ulf (2010): Short-term response of the coccolithophore Emiliania huxleyi to an abrupt change in seawater carbon dioxide concentrations. Biogeosciences, 7(1), 177-186, https://doi.org/10.5194/bg-7-177-2010
Barcelos e Ramos, Joana; Schulz, Kai Georg; Brownlee, Colin; Sett, Scarlett; Azevedo, Eduardo Brito (2014): Effects of Increasing Seawater Carbon Dioxide Concentrations on Chain Formation of the Diatom Asterionellopsis glacialis. PLoS ONE, 9(3), e90749, https://doi.org/10.1371/journal.pone.0090749
Basallote, M Dolores; De Orte, Manoela R; DelValls, T Angel; Riba, Inmaculada (2014): Studying the Effect of CO2-Induced Acidification on Sediment Toxicity Using Acute Amphipod Toxicity Test. Environmental Science & Technology, 48(15), 8864-8872, https://doi.org/10.1021/es5015373
Bates, Nicolas R; Amat, A; Andersson, Andreas J (2010): Feedbacks and responses of coral calcification on the Bermuda reef system to seasonal changes in biological processes and ocean acidification. Biogeosciences, 7(8), 2509-2530, https://doi.org/10.5194/bg-7-2509-2010
Baumann, Hannes; Talmage, Stephanie C; Gobler, Christopher J (2012): Reduced early life growth and survival in a fish in direct response to increased carbon dioxide. Nature Climate Change, 2, 38-41, https://doi.org/10.1038/nclimate1291
Beaufort, Luc; Probert, Ian; de Garidel-Thoron, Thibault; Bendif, E M; Ruiz-Pino, Diana; Metzi, N; Goyet, Catherine; Buchet, Noëlle; Coupel, Pierre; Grelaud, Michaël; Rost, Bjoern; Rickaby, Rosalind E M; De Vargas, Colomban (2011): Sensitivity of coccolithophores to carbonate chemistry and ocean acidification. Nature, 476, 80-83, https://doi.org/10.1038/nature10295
Bechmann, Renée Katrin; Taban, Ingrid Christina; Westerlund, Stig; Godal, Brit Fjone; Arnberg, Maj; Vingen, Sjur; Ingvarsdottir, Anna; Baussant, Thierry (2011): Effects of ocean acidification on early life stages of shrimp (Pandalus borealis) and mussel (Mytilus edulis). Journal of Toxicology and Environmental Health-Part A-Current Issues, 74(7-9), 424-438, https://doi.org/10.1080/15287394.2011.550460
Bednaršek, Nina; Tarling, Geraint A; Bakker, Dorothee C E; Fielding, Sophie; Cohen, Anne L; Kuzirian, Alan; McCorkle, Daniel C; Lézé, Bertrand; Montagna, Roberto (2012): Description and quantification of pteropod shell dissolution: A sensitive bioindicator of ocean acidification. Global Change Biology, 18(7), 2378-2388, https://doi.org/10.1111/j.1365-2486.2012.02668.x
Bednaršek, Nina; Tarling, Geraint A; Bakker, Dorothee C E; Fielding, Sophie; Jones, Elizabeth M; Venables, H J; Ward, Peter; Kuzirian, Alan; Lézé, Bertrand; Feely, Richard A; Murphy, Eugene J (2012): Extensive dissolution of live pteropods in the Southern Ocean. Nature Geoscience, 5(12), 881-885, https://doi.org/10.1038/ngeo1635
Bellerby, Richard G J; Schulz, Kai Georg; Riebesell, Ulf; Neill, Craig; Nondal, G; Heegaard, E; Johannessen, Truls; Brown, K R (2008): Marine ecosystem community carbon and nutrient uptake stoichiometry under varying ocean acidification during the PeECE III experiment. Biogeosciences, 5(6), 1517-1527, https://doi.org/10.5194/bg-5-1517-2008
Beniash, Elia; Ivanina, Anna; Lieb, Nicholas S; Kurochkin, Ilya; Sokolova, Inna A (2010): Elevated level of carbon dioxide affects metabolism and shell formation in oysters Crassostrea virginica. Marine Ecology Progress Series, 419, 95-108, https://doi.org/10.3354/meps08841
Bibby, Ruth; Cleall-Harding, Polly; Rundle, Simon; Widdicombe, Stephen; Spicer, John I (2007): Ocean acidification disrupts induced defences in the intertidal gastropod Littorina littorea. Biology Letters, 3(6), 699-701, https://doi.org/10.1098/rsbl.2007.0457
Bibby, Ruth; Widdicombe, Stephen; Parry, Helen E; Spicer, John I; Pipe, R (2008): Effects of ocean acidification on the immune response of the blue mussel Mytilus edulis. Aquatic Biology, 2(1), 97-74, https://doi.org/10.3354/ab00037
Biermann, Antje; Engel, Anja (2010): Effect of CO2 on the properties and sinking velocity of aggregates of the coccolithophore Emiliania huxleyi. Biogeosciences, 7(3), 1017-1029, https://doi.org/10.5194/bg-7-1017-2010
Biswas, Haimanti; Cros, Alexander; Yadav, Kamana; Ramana, V Venkata; Prasad, V Rajendra; Archaryya, Tamoghna; Babu, P V Raghunadh (2011): The response of a natural phytoplankton community from the Godavari River Estuary to increasing CO2 concentration during the pre-monsoon period. Journal of Experimental Marine Biology and Ecology, 407(2), 284-293, https://doi.org/10.1016/j.jembe.2011.06.027
Bögner, Desislava; Bickmeyer, Ulf; Köhler, Angela (2014): CO2-induced fertilization impairment in Strongylocentrotus droebachiensis collected in the Arctic. Helgoland Marine Research, 68(2), 341-356, https://doi.org/10.1007/s10152-014-0394-3
Borchard, Corinna; Borges, Alberto Vieira; Händel, Nicole; Engel, Anja (2011): Biogeochemical response of Emiliania huxleyi (PML B92/11) to elevated CO2 and temperature under phosphorous limitation: A chemostat study. Journal of Experimental Marine Biology and Ecology, 410, 61-71, https://doi.org/10.1016/j.jembe.2011.10.004
Borchard, Corinna; Engel, Anja (2012): Organic matter exudation by Emiliania huxleyi under simulated future ocean conditions. Biogeosciences, 9(8), 3405-3423, https://doi.org/10.5194/bg-9-3405-2012
Boucher, Guy; Clavier, Jacques; Garrigue, Claire (1994): Oxygen and carbon dioxide fluxes at the water-sediment interface of a tropical lagoon. Marine Ecology Progress Series, 107, 185-193, https://doi.org/10.3354/meps107185
Brading, Patrick; Warner, Mark E; Davey, Philip; Smith, David J; Achterberg, Eric Pieter; Suggett, David J (2011): Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae). Limnology and Oceanography, 56(3), 927-938, https://doi.org/10.4319/lo.2011.56.3.0927