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Cueto-Vega, Rosa; Flye-Sainte-Marie, Jonathan; Palacios, Fernando; Carhuapoma, Wilson; García-Corona, José Luis; Aguirre-Velarde, Arturo; Jean, Fred; Gil-Kodaka, Patricia; Mendo, Jaime; Thouzeau, Gérard (2026): Physiological and growth response data of the Peruvian scallop Argopecten purpuratus during a 51-day factorial experiment under hypoxia and seawater acidification [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.994158 (DOI registration in progress)

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Published: 2026-05-11

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Abstract:
This dataset contains the physical, biometrical, and physiological parameters of the Peruvian scallop Argopecten purpuratus collected during a 51-day laboratory experiment. The study followed a 2×2 factorial design crossing two oxygen levels (Hypoxia 20% sat. vs. Normoxia 100% sat.) and two pH levels (Low pH 7.4 vs. Normal pH 7.8). Data includes daily environmental monitoring of the experimental tanks (temperature, pH, dissolved oxygen, salinity and total alcalinity), daily survival rates, and bi-weekly measurements of shell height, dry weight of tissues ( gonad, flesh, shell), and physiological indices such as the gonadosomatic index, Fulton's condition index, standardized clearance and net calcification rates.This dataset supports the findings on the article Trade-off between growth and reproduction in Argopecten purpuratus (L.) scallops exposed to medium-term hypoxia and acidification.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2026-05-11.
Keyword(s):
Animalia; Argopecten purpuratus; Benthic animals; Benthos; Calcification/Dissolution; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; Ocean acidification; Oxygen; Reproduction; Single species; South Pacific; Tropical
Related to:
Cueto-Vega, Rosa; Flye-Sainte-Marie, Jonathan; García-Corona, José Luis; Palacios, Fernando; Jean, Fred; Aguirre-Velarde, Arturo; Gil-Kodaka, Patricia; Mendo, Jaime; Thouzeau, Gérard (2024): Trade-off between growth and reproduction in Argopecten purpuratus (L.) scallops exposed to medium-term hypoxia and acidification. Aquaculture, 586, 740713, https://doi.org/10.1016/j.aquaculture.2024.740713
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: -4.178351 * Longitude: -81.130444
Date/Time Start: 2018-06-07T00:00:00 * Date/Time End: 2018-08-02T00:00:00
Event(s):
Hatchery_AgroMar_del_Pacífico * Latitude: -4.178351 * Longitude: -81.130444 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeCueto-Vega, Rosa
2Species, unique identificationSpecies UIDCueto-Vega, Rosa
3Species, unique identification (URI)Species UID (URI)Cueto-Vega, Rosa
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Cueto-Vega, Rosa
5TreatmentTreatCueto-Vega, Rosa
6Day of experimentDOEdayCueto-Vega, Rosa
7DATE/TIMEDate/TimeCueto-Vega, RosaGeocode
8IdentificationIDCueto-Vega, RosaAquarium
9Shell heightShell hmmCueto-Vega, Rosa
10Shell, dry massSDMgCueto-Vega, Rosa
11Gonad, dry massGon dmgCueto-Vega, Rosa
12Flesh, dry massFlesh dmgCueto-Vega, Rosa
13SurvivalSurvival%Cueto-Vega, Rosa
14Clearance rate, standardizedCR stdl/h/#Cueto-Vega, Rosa
15Growth rateµmm/dayCueto-Vega, Rosa
16Condition indexCIg/cm3Cueto-Vega, Rosa
17Calcification rate of calcium carbonateCalc rate CaCO3mg/g/dayCueto-Vega, RosaNet
18Gonadosomatic indexGSI%Cueto-Vega, Rosa
19SurvivalSurvival%Cueto-Vega, RosaDaily
20Oxygen saturationO2 sat%Cueto-Vega, Rosa
21Oxygen saturation, standard errorO2 sat std e±Cueto-Vega, Rosa
22pH, NBS scalepH NBSCueto-Vega, Rosa
23pH, standard errorpH std e±Cueto-Vega, RosaNBS scale
24Temperature, waterTemp°CCueto-Vega, Rosa
25Temperature, water, standard errorT std e±Cueto-Vega, Rosa
26Alkalinity, totalATµmol/kgCueto-Vega, Rosa
27Alkalinity, total, standard errorAT std e±Cueto-Vega, Rosa
28Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmCueto-Vega, Rosa
29Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Cueto-Vega, Rosa
30Calcite saturation stateOmega CalCueto-Vega, Rosa
31Calcite saturation state, standard errorOmega Cal std e±Cueto-Vega, Rosa
32Aragonite saturation stateOmega ArgCueto-Vega, Rosa
33Aragonite saturation state, standard errorOmega Arg std e±Cueto-Vega, Rosa
34SalinitySalCueto-Vega, Rosa
35Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
34889 data points

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