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Eaton, Katherine R; Banister, Raymond B; Arick, Lindsay N; Hall, Emily R; Muller, Erinn (2025): Seawater carbonate chemistry and SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata genotypes [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.988340

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Published: 2025-12-23 • DOI registered: 2026-01-21

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Abstract:
Here, we exposed Orbicella faveolata and Pseudodiploria clivosa genotypes to wild colonies showing signs consistent with stony coral tissue loss disease (SCTLD) immediately following a 2-month long exposure to ocean warming (OW) and ocean acidification (OA) scenarios. Corals were exposed to SCTLD for 3 weeks while maintaining the environmental treatments.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Github (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-12-22.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Cnidaria; Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Orbicella faveolata; Other studied parameter or process; Pseudodiploria clivosa; Single species; Temperature
Related to:
Eaton, Katherine R; Banister, Raymond B; Arick, Lindsay N; Hall, Emily R; Muller, Erinn (2025): Genotype and symbiont composition rather than environment influence susceptibility to stony coral tissue loss disease in coral restoration broodstock. Scientific Reports, https://doi.org/10.1038/s41598-025-29292-9
Source:
GitHub - katie-eaton/Mote_2018_OfavPcli_Disease: This repository is for the 2018 Mote state funded project examining the effects of end-of-century ocean warming and acidification on SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata [dataset]. https://github.com/katie-eaton/Mote_2018_OfavPcli_Disease
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeEaton, Katherine R
2Species, unique identificationSpecies UIDEaton, Katherine R
3Species, unique identification (Semantic URI)Species UID (Semantic URI)Eaton, Katherine R
4Species, unique identification (URI)Species UID (URI)Eaton, Katherine R
5TreatmentTreatEaton, Katherine R
6GenotypeGenotypeEaton, Katherine R
7Relative risk, medianMedian RREaton, Katherine R
8RatioRatioEaton, Katherine R
9Fragments, get diseaseFragm get disease%Eaton, Katherine R
10Temperature, waterTemp°CEaton, Katherine R
11Temperature, water, standard errorT std e±Eaton, Katherine R
12SalinitySalEaton, Katherine R
13Salinity, standard errorSal std e±Eaton, Katherine R
14Oxygen, dissolvedDOmg/lEaton, Katherine R
15Oxygen, dissolved, standard errorDO std e±Eaton, Katherine R
16IrradianceEµmol photons/m2/sEaton, Katherine R
17Irradiance, standard errorE std e±Eaton, Katherine R
18Alkalinity, totalATµmol/kgEaton, Katherine R
19Alkalinity, total, standard errorAT std e±Eaton, Katherine R
20Carbon, inorganic, dissolvedDICµmol/kgEaton, Katherine R
21Carbon, inorganic, dissolved, standard errorDIC std e±Eaton, Katherine R
22pH, total scalepHTEaton, Katherine RCalculated using CO2SYS
23pH, standard errorpH std e±Eaton, Katherine RCalculated using CO2SYStotal scale
24Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmEaton, Katherine RCalculated using CO2SYS
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Eaton, Katherine RCalculated using CO2SYS
26Aragonite saturation stateOmega ArgEaton, Katherine RCalculated using CO2SYS
27Aragonite saturation state, standard errorOmega Arg std e±Eaton, Katherine RCalculated using CO2SYS
28Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3636 data points

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