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Eaton, Katherine R; Banister, Raymond B; Arick, Lindsay N; Hall, Emily R; Muller, Erinn (2025): Seawater carbonate chemistry and SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata genotypes [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.988340

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2025-12-23 • DOI registered: 2026-01-21

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Abstract:
Here, we exposed Orbicella faveolata and Pseudodiploria clivosa genotypes to wild colonies showing signs consistent with stony coral tissue loss disease (SCTLD) immediately following a 2-month long exposure to ocean warming (OW) and ocean acidification (OA) scenarios. Corals were exposed to SCTLD for 3 weeks while maintaining the environmental treatments.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Github (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-12-22.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Cnidaria; Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Orbicella faveolata; Other studied parameter or process; Pseudodiploria clivosa; Single species; Temperature
Related to:
Eaton, Katherine R; Banister, Raymond B; Arick, Lindsay N; Hall, Emily R; Muller, Erinn (2025): Genotype and symbiont composition rather than environment influence susceptibility to stony coral tissue loss disease in coral restoration broodstock. Scientific Reports, https://doi.org/10.1038/s41598-025-29292-9
Source:
GitHub - katie-eaton/Mote_2018_OfavPcli_Disease: This repository is for the 2018 Mote state funded project examining the effects of end-of-century ocean warming and acidification on SCTLD susceptibility in nursery-reared Pseudodiploria clivosa and Orbicella faveolata [dataset]. https://github.com/katie-eaton/Mote_2018_OfavPcli_Disease
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1 Type of studyStudy typeEaton, Katherine R
2 Species, unique identificationSpecies UIDEaton, Katherine R
3 Species, unique identification (Semantic URI)Species UID (Semantic URI)Eaton, Katherine R
4 Species, unique identification (URI)Species UID (URI)Eaton, Katherine R
5 TreatmentTreatEaton, Katherine R
6 GenotypeGenotypeEaton, Katherine R
7 Relative risk, medianMedian RREaton, Katherine R
8 RatioRatioEaton, Katherine R
9 Fragments, get diseaseFragm get disease%Eaton, Katherine R
10 Temperature, waterTemp°CEaton, Katherine R
11 Temperature, water, standard errorT std e±Eaton, Katherine R
12 SalinitySalEaton, Katherine R
13 Salinity, standard errorSal std e±Eaton, Katherine R
14 Oxygen, dissolvedDOmg/lEaton, Katherine R
15 Oxygen, dissolved, standard errorDO std e±Eaton, Katherine R
16 IrradianceEµmol photons/m2/sEaton, Katherine R
17 Irradiance, standard errorE std e±Eaton, Katherine R
18 Alkalinity, totalATµmol/kgEaton, Katherine R
19 Alkalinity, total, standard errorAT std e±Eaton, Katherine R
20 Carbon, inorganic, dissolvedDICµmol/kgEaton, Katherine R
21 Carbon, inorganic, dissolved, standard errorDIC std e±Eaton, Katherine R
22 pH, total scalepHTEaton, Katherine RCalculated using CO2SYS
23 pH, standard errorpH std e±Eaton, Katherine RCalculated using CO2SYStotal scale
24 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmEaton, Katherine RCalculated using CO2SYS
25 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Eaton, Katherine RCalculated using CO2SYS
26 Aragonite saturation stateOmega ArgEaton, Katherine RCalculated using CO2SYS
27 Aragonite saturation state, standard errorOmega Arg std e±Eaton, Katherine RCalculated using CO2SYS
28 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3636 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 
Study type
2 
Species UID
3 
Species UID (Semantic URI)
4 
Species UID (URI)
5 
Treat
6 
Genotype
7 
Median RR
8 
Ratio
9 
Fragm get disease [%]
10 
Temp [°C]
11 
T std e [±]
12 
Sal
13 
Sal std e [±]
14 
DO [mg/l]
15 
DO std e [±]
16 
E [µmol photons/m2/s]
17 
E std e [±]
18 
AT [µmol/kg]
19 
AT std e [±]
20 
DIC [µmol/kg]
21 
DIC std e [±]
22 
pHT
(Calculated using CO2SYS)
23 
pH std e [±]
(total scale, Calculated using...)
24 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
25 
pCO2water_SST_wet std e [±]
(Calculated using CO2SYS)
26 
Omega Arg
(Calculated using CO2SYS)
27 
Omega Arg std e [±]
(Calculated using CO2SYS)
28 
CSC flag
(Calculated using seacarb afte...)
29 
pHT
(Calculated using seacarb afte...)
30 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
31 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
32 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
33 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
34 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
35 
Omega Arg
(Calculated using seacarb afte...)
36 
Omega Cal
(Calculated using seacarb afte...)
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF14.91100.00537427.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF22.39700.00709627.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF1253.64700.00578427.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF1263.69701.00446927.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF271.01700.00860827.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF30.99160.00592827.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF53.60900.03587127.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF612.35000.01956727.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF83.67000.83673327.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgControlOF113.62600.00863327.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
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laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF1261.00401.00446927.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
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laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF31.00700.00592827.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF52.27600.03587127.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF610.97870.01956727.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF81.00200.83673327.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean acidificationOF111.02700.00863327.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
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laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean warming and ocean acidificationOF611.03800.01956731.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
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laboratoryOrbicella faveolataurn:lsid:marinespecies.org:taxname:758261marinespecies.orgocean warmingOF110.97440.00863331.40.0135.80.16.20.03382.858.921552192627.830.00266842.70.01157.8315.93655.90657.851745.00165.072.694.00
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laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgControlPC172.36307.88581827.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgControlPC32.335040.46070027.20.0135.70.16.60.03393.459.621512192327.890.00256832.60.01157.8914.93557.19558.931745.10162.972.603.92
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean acidificationPC122.3880149.73606527.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
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laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warming and ocean acidificationPC172.36907.88581831.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warming and ocean acidificationPC32.316040.46070031.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
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laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warmingPC1266.631.40.0135.80.16.20.03382.858.921552192627.830.00266842.70.01157.8315.93655.90657.851745.00165.072.694.00
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean acidificationPC1233.327.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warming and ocean acidificationPC1233.331.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
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laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warmingPC1733.331.40.0135.80.16.20.03382.858.921552192627.830.00266842.70.01157.8315.93655.90657.851745.00165.072.694.00
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean acidificationPC170.027.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warming and ocean acidificationPC1733.331.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
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laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warmingPC333.331.40.0135.80.16.20.03382.858.921552192627.830.00266842.70.01157.8315.93655.90657.851745.00165.072.694.00
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean acidificationPC30.027.20.0135.70.16.00.03394.459.921542202937.650.002106461.60.01157.6627.931042.371045.631898.02103.051.642.48
laboratoryPseudodiploria clivosaurn:lsid:marinespecies.org:taxname:828326marinespecies.orgocean warming and ocean acidificationPC333.331.50.0135.70.15.60.03379.657.921522202737.600.002122561.70.01157.6029.561218.871222.481892.72104.721.712.54
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