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Data Publisher for Earth & Environmental Science

Lemmens, M; Teickner, Henning; Knorr, Klaus-Holger: Geochemical parameters in peat depth profiles from ombrotrophic bogs in North and Central Europe. Amtsvenn, Germany [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.988152 (dataset in review)

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Abstract:
This dataset contains geochemical variables measured in six depth profiles from ombrotrophic peatlands in North and Central Europe. Peat cores were taken during the spring and summer of 2022 from Amtsvenn (AV1), Germany; Drebbersches Moor (DM1), Germany; Fochteloër Veen (FV1), the Netherlands; Bagno Kusowo (KR1), Poland; Pichlmaier Moor (PI1), Austria and Pürgschachen Moor (PM1), Austria. The cores AV1, DM1 and KR1 were taken using a Wardenaar sampler (Royal Eijkelkamp, Giesbeek, the Netherlands) and had diameter of 10 cm. The cores FV1, PM1 and PI1 had an 8 cm diameter and were obtained using an Instorf sampler (Royal Eijkelkamp, Giesbeek, the Netherlands). The cores FV1, DM1 and KR1 were 100 cm, core AV1 was 95 cm, core PI1 was 85 cm and core PM1 was 200 cm. The cores were subsampeled in 1 cm (AV1, DM1, KR1, FV1) and 2 cm (PI1, PM1) sections. The subsamples were milled after freeze drying in a ballmill using tungen carbide accesoires. X-Ray Fluorescence (WD-XRF; ZSX Primus II, Rigaku, Tokyo, Japan) was used to determine Al (μg g-1), As (μg g-1), Ba (μg g-1), Br (μg g-1), Ca (g g-1), Cl (μg g-1), Cr (μg g-1), Cu (μg g-1), Fe (g g-1), K (g g-1), Mg (μg g-1), Mn (μg g-1), Na (μg g-1), P (μg g-1), Pb (μg g-1), Rb (μg g-1), S (μg g-1), Si (μg g-1), Sr (μg g-1), Ti (μg g-1) and Zn (μg g-1). These data were processed and calibrated using the iloekxrf package (Teickner & Knorr, 2024) in R. C, N and their stable isotopes were determined using an elemental analyser linked to an isotope ratio mass spectrometer (EA-3000, Eurovector, Pavia, Italy & Nu Horizon, Nu Instruments, Wrexham, UK). C and N were given in units g g-1 and stable isotopes were given as δ13C and δ15N for stable isotopes of C and N, respectively. Raw data C, N and stable isotope data were calibrated with certified standard and blank effects were corrected with the ilokeirms package (Teickner & Knorr, 2024). Using Fourier Transform Mid-Infrared Spectroscopy (FT-MIR) (Agilent Cary 670 FTIR spectromter, Agilent Technologies, Santa Clara, Ca, USA) humification indices (HI) were determined. Spectra were recorded from 600 cm-1 to 4000 cm-1 with a resolution of 2 cm-1 and baselines corrected with the ir package (Teickner, 2025) to estimate relative peack heights. The HI (no unit) for each sample was calculated by taking the ratio of intensities at 1630 cm-1 to the intensities at 1090 cm-1. Bulk densities (g cm-3) were estimated from FT-MIR data (Teickner et al., in preparation).
Keyword(s):
bulk density; C/N; Humification index; peat decomposition indicators
Related to:
Teickner, Henning (2025): Functions to Handle and Preprocess Infrared Spectra (Version 0.4.1) [software]. https://henningte.github.io/ir/
Teickner, Henning; Knorr, Klaus-Holger (2024): Iloekirms: Imports and preprocesses data from the EA-IRMS at the laboratory of the Institute of Landscape Ecology at the University Münster (0.0.0.9000) [software]. Gitlab, https://zivgitlab.uni-muenster.de/h_teic01/iloekirms
Funding:
Horizon 2020 of the European Commission (H2020), grant/award no. 101003777: BiodivRestore
Coverage:
Latitude: 6.955444 * Longitude: 52.175472
Minimum ALTITUDE: 44 m * Maximum ALTITUDE: 44 m
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ProjectProjectLemmens, M
2Sample IDSample IDLemmens, M
3Sample code/labelSample labelLemmens, M
4CoreCoreLemmens, M
5LONGITUDELongitudeLemmens, MGeocode
6LATITUDELatitudeLemmens, MGeocode
7ALTITUDEAltitudemLemmens, MGeocode
8SiteSiteLemmens, M
9Depth, peat baseDepth peat basecmLemmens, M
10Depth, peat topDepth peat topcmLemmens, M
11Sample typeSamp typeLemmens, M
12TreatmentTreatLemmens, M
13Sample methodSample methodLemmens, Mmixed sample
14Measurement identificationMeasurement IDLemmens, M
15Measurement typeMeasurement typeLemmens, M
16Measurement identificationMeasurement IDLemmens, Mmeasurement label
17CommentCommentLemmens, Mfinal data
18StatusStatusLemmens, MDone
19ScanScanLemmens, M
20FactorFactorLemmens, Mdetector gain factor
21FrequencyFrequencykHzLemmens, Mscan speed
22Laser wave numberLaser wnLemmens, M
23DetectorDetectorLemmens, M
24Sample sourceSample sourceLemmens, M
25Purge delayPurge dsLemmens, M
26FactorFactorLemmens, Mzero filling factor
27Apodisation functionApo fLemmens, M
28FactorFactorLemmens, Mexponentiation factor
29Numbern#Lemmens, Mdata point number
30VariableVariableLemmens, Mx variable type
31VariableVariableLemmens, My variable type
32DateDateLemmens, Mmeasurement date
33Sample methodSample methodLemmens, M
34Density, peat, dry bulkPeat DBDg/cm3Lemmens, M
35Measurement commentMeasurement commLemmens, Mbulk density 1 in pd
36Measurement commentMeasurement commLemmens, Mremeasurement
37CarbonCg/gLemmens, M
38NitrogenNg/gLemmens, M
39δ13Cδ13C‰ PDBLemmens, M
40δ15Nδ15N‰ airLemmens, M
41File nameFile nameLemmens, M
42File nameFile nameLemmens, M
43δ15N, calibration rangeδ15N cal ranLemmens, M
44δ13C, calibration rangeδ13C cal ranLemmens, M
45Sample massSamp mgLemmens, Mxrf sample mass
46SodiumNacpsLemmens, MKA
47MagnesiumMgcpsLemmens, MKA
48AluminiumAlcpsLemmens, MKA
49SiliconSicpsLemmens, MKA
50PhosphorusPcpsLemmens, MKA
51SulfurScpsLemmens, MKA
52ChlorineClcpsLemmens, MKA
53PotassiumKcpsLemmens, MKA
54CalciumCacpsLemmens, MKA
55TitaniumTicpsLemmens, MKA
56ChromiumCrcpsLemmens, MKA
57ManganeseMncpsLemmens, MKA
58IronFecpsLemmens, MKA
59CopperCucpsLemmens, MKA
60ZincZncpsLemmens, MKA
61ArsenicAscpsLemmens, MKA
62BromineBrcpsLemmens, MKA
63RubidiumRbcpsLemmens, MKA
64StrontiumSrcpsLemmens, MKA
65BariumBacpsLemmens, MLA
66LeadPbcpsLemmens, MLA
67AluminiumAlµg/gLemmens, M
68ArsenicAsµg/gLemmens, M
69BariumBaµg/gLemmens, M
70BromineBrµg/gLemmens, M
71CalciumCag/gLemmens, M
72ChlorineClµg/gLemmens, M
73ChromiumCrµg/gLemmens, M
74CopperCuµg/gLemmens, M
75IronFeg/gLemmens, M
76PotassiumKg/gLemmens, M
77MagnesiumMgµg/gLemmens, M
78ManganeseMnµg/gLemmens, M
79SodiumNaµg/gLemmens, M
80PhosphorusPµg/gLemmens, M
81LeadPbµg/gLemmens, M
82RubidiumRbµg/gLemmens, M
83SulfurSµg/gLemmens, M
84SiliconSig/gLemmens, M
85StrontiumSrµg/gLemmens, M
86TitaniumTiµg/gLemmens, M
87ZincZnµg/gLemmens, M
88Uncertainty boundaryUncertainty boundLemmens, MAl; exceeds (False, True)
89Uncertainty boundaryUncertainty boundLemmens, MAs; exceeds (False, True)
90Uncertainty boundaryUncertainty boundLemmens, MBa; exceeds (False, True)
91Uncertainty boundaryUncertainty boundLemmens, MBr; exceeds (False, True)
92Uncertainty boundaryUncertainty boundLemmens, MCa; exceeds (False, True)
93Uncertainty boundaryUncertainty boundLemmens, MCl; exceeds (False, True)
94Uncertainty boundaryUncertainty boundLemmens, MCr; exceeds (False, True)
95Uncertainty boundaryUncertainty boundLemmens, MCu; exceeds (False, True)
96Uncertainty boundaryUncertainty boundLemmens, MFe; exceeds (False, True)
97Uncertainty boundaryUncertainty boundLemmens, MK; exceeds (False, True)
98Uncertainty boundaryUncertainty boundLemmens, MMg; exceeds (False, True)
99Uncertainty boundaryUncertainty boundLemmens, MMn; exceeds (False, True)
100Uncertainty boundaryUncertainty boundLemmens, MNa; exceeds (False, True)
101Uncertainty boundaryUncertainty boundLemmens, MP; exceeds (False, True)
102Uncertainty boundaryUncertainty boundLemmens, MPb; exceeds (False, True)
103Uncertainty boundaryUncertainty boundLemmens, MRb; exceeds (False, True)
104Uncertainty boundaryUncertainty boundLemmens, MS; exceeds (False, True)
105Uncertainty boundaryUncertainty boundLemmens, MSi; exceeds (False, True)
106Uncertainty boundaryUncertainty boundLemmens, MSr; exceeds (False, True)
107Uncertainty boundaryUncertainty boundLemmens, MTi; exceeds (False, True)
108Uncertainty boundaryUncertainty boundLemmens, MZn; exceeds (False, True)
109CommentCommentLemmens, M
110Humification indexHIXLemmens, M1420 - 1090
111Humification indexHIXLemmens, M1510 - 1090
112Humification indexHIXLemmens, M1630 - 1090
113Humification indexHIXLemmens, M1720 – 1090
114Density, peat, dry bulk, errorPeat DBD err±Lemmens, M
115Carbon, errorC err±Lemmens, M
116Nitrogen, errorN err±Lemmens, M
117δ13C, errorδ13C e±Lemmens, M
118δ15N, errorδ15N err±Lemmens, M
119Aluminium, errorAl e±Lemmens, M
120Arsenic, errorAs e±Lemmens, M
121Barium, errorBa e±Lemmens, M
122Bromine, errorBr e±Lemmens, M
123Calcium, errorCa e±Lemmens, M
124Chlorine, errorCl e±Lemmens, M
125Chromium, errorCr e±Lemmens, M
126Copper, errorCu e±Lemmens, M
127Iron, errorFe e±Lemmens, M
128Potassium, errorK e±Lemmens, M
129Magnesium, errorMg e±Lemmens, M
130Manganese, errorMn e±Lemmens, M
131Sodium, errorNa e±Lemmens, M
132Phosphorus, errorP e±Lemmens, M
133Lead, errorPb e±Lemmens, M
134Rubidium, errorRb e±Lemmens, M
135Sulfur, errorS e±Lemmens, M
136Silicon, errorSi e±Lemmens, M
137Strontium, errorSr e±Lemmens, M
138Titanium, errorTi e±Lemmens, M
139Zinc, errorZn e±Lemmens, M
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
12827 data points

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