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Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Álvarez, Marta; González-Pola, César; Rakka, Maria; Movilla, Juancho; Beck, Kristina K; Atienza, Eva M S; Acerbi, Rubén; Orejas, Covadonga (2025): Seawater carbonate chemistry and coral skeletal growth, tissue cover and respiration [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.988024 (DOI registration in progress)

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Published: 2025-12-11

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Abstract:
In this study, a nine-month aquaria experiment was conducted on the CWC Dendrophyllia cornigera from the NW Iberian Shelf (NE Atlantic Ocean). The aim was to assess the individual and combined effects of elevated temperature (12 vs. 15 °C), low pH (~ 7.99 vs. 7.69 pHT) and low oxygen (~ 6.4 vs. 4.7 mL L−1), based on the IPCC RCP 8.5 scenario. During the experiment, coral survival, skeletal growth, tissue cover and respiration were monitored as response variables.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-12-10.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Growth/Morphology; Laboratory experiment; North Atlantic; Oxygen; Respiration; Single species; Temperate; Temperature
Related to:
Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Álvarez, Marta; González-Pola, César; Rakka, Maria; Movilla, Juancho; Beck, Kristina K; Atienza, Eva M S; Acerbi, Rubén; Orejas, Covadonga (2025): Resistance of the cold-water coral Dendrophyllia cornigera to single and combined global change stressors. Scientific Reports, 15(1), 40306, https://doi.org/10.1038/s41598-025-24028-1
Source:
Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Álvarez, Marta; Acerbi, Rubén; Vázquez, Lucía; Varela, Marta M; Alba-Salgueiro, Rodrigo; Valencia-Vila, Joaquín; Orejas, Covadonga (2024): Respiration rates of the cold-water coral Dendrophyllia cornigera from a long-term multi-stressor experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.966748
Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Álvarez, Marta; Acerbi, Rubén; Vázquez, Lucía; Varela, Marta M; Alba-Salgueiro, Rodrigo; Valencia-Vila, Joaquín; Orejas, Covadonga (2024): Skeletal growth rates of the cold-water coral Dendrophyllia cornigera from a long-term multi-stressor experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.966744
Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Atienza, Eva M S; Álvarez, Marta; González-Pola, César; Acerbi, Rubén; Vázquez, Lucía; Varela, Marta M; Alba-Salgueiro, Rodrigo; Valencia-Vila, Joaquín; Orejas, Covadonga (2024): Tissue extension rates of the cold-water coral Dendrophyllia cornigera from a long-term multi-stressor experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.972862
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
Gutiérrez-Zárate, Cristina; Gori, Andrea; Veiga, Alfredo; Álvarez, Marta; González-Pola, César; Rakka, Maria; Movilla, Juancho; Beck, Kristina K; Atienza, Eva M S; Acerbi, Rubén; Orejas, Covadonga (2025): Skeletal growth rates of the cold-water coral Dendrophyllia cornigera for each time interval of a long-term multi-stressor experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.978153
Project(s):
Integrated Assessment of Atlantic Marine Ecosystems in Space and Time (iAtlantic)
Ocean Acidification International Coordination Centre (OA-ICC)
Funding:
Horizon 2020 (H2020), grant/award no. 818123: Integrated Assessment of Atlantic Marine Ecosystems in Space and Time
Horizon 2020 (H2020), grant/award no. 964545: BAM! (Horizon 2020 FET)
Coverage:
Latitude: 43.398822 * Longitude: -8.700804
Date/Time Start: 2019-09-11T00:00:00 * Date/Time End: 2019-09-11T00:00:00
Minimum Elevation: -150.0 m * Maximum Elevation: -150.0 m
Event(s):
Dendrophyllia_Bycatch * Latitude: 43.398822 * Longitude: -8.700804 * Date/Time: 2019-09-11T00:00:00 * Elevation: -150.0 m * Location: Atlantic Ocean * Method/Device: Accidental bycatch sampling
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGutiérrez-Zárate, Cristina
2Species, unique identificationSpecies UIDGutiérrez-Zárate, Cristina
3Species, unique identification (URI)Species UID (URI)Gutiérrez-Zárate, Cristina
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Gutiérrez-Zárate, Cristina
5TreatmentTreatGutiérrez-Zárate, Cristina
6ReplicateReplGutiérrez-Zárate, Cristina
7Specimen identificationSpec IDGutiérrez-Zárate, CristinaCoral ID
8Specimen identificationSpec IDGutiérrez-Zárate, CristinaColony ID
9Growth rateµ%/dayGutiérrez-Zárate, CristinaBuoyant weighing technique according to Davies (1989)skeletal
10Experiment durationExp durationdaysGutiérrez-Zárate, Cristina
11Dry massDry mgGutiérrez-Zárate, CristinaHigh precision balance, Ohaus Adventurer Analytical Balance, AX124
12Surface areaSAcm2Gutiérrez-Zárate, CristinaPhotogrammetry from 3D reconstructionTissue-covered surface area
13Dendrophyllia cornigera, respiration rate, oxygen, per dry massD. cornigera resp O2/dmµmol/g/dayGutiérrez-Zárate, CristinaOxygen sensor, YSI ProODOCalculated
14Respiration rate, oxygenResp O2µmol/cm2/dayGutiérrez-Zárate, CristinaOxygen sensor, YSI ProODOCalculated
15Coral polyp numberPolyp NoGutiérrez-Zárate, Cristina
16Surface areaSAmm2Gutiérrez-Zárate, Cristinatissue, t0
17Surface areaSAmm2Gutiérrez-Zárate, Cristinatissue, t6-months
18Surface areaSAmm2Gutiérrez-Zárate, Cristinatissue, t9-months
19Growth rateµ%/dayGutiérrez-Zárate, Cristinatissue extension
20Temperature, waterTemp°CGutiérrez-Zárate, Cristina
21Temperature, water, standard deviationTemp std dev±Gutiérrez-Zárate, Cristina
22pH, total scalepHTGutiérrez-Zárate, Cristina
23pH, standard deviationpH std dev±Gutiérrez-Zárate, Cristinatotal scale
24Oxygen, dissolvedDOml/lGutiérrez-Zárate, Cristina
25Oxygen, dissolved, standard deviationDO std dev±Gutiérrez-Zárate, Cristina
26SalinitySalGutiérrez-Zárate, Cristina
27Salinity, standard deviationSal std dev±Gutiérrez-Zárate, Cristina
28Alkalinity, totalATµmol/kgGutiérrez-Zárate, Cristina
29Alkalinity, total, standard deviationAT std dev±Gutiérrez-Zárate, Cristina
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGutiérrez-Zárate, CristinaCalculated with seacarb package in R
31Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
32Carbon, inorganic, dissolvedDICµmol/kgGutiérrez-Zárate, CristinaCalculated with seacarb package in R
33Carbon, inorganic, dissolved, standard deviationDIC std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
34Bicarbonate ion[HCO3]-µmol/kgGutiérrez-Zárate, CristinaCalculated with seacarb package in R
35Bicarbonate ion, standard deviation[HCO3]- std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
36Carbonate ion[CO3]2-µmol/kgGutiérrez-Zárate, CristinaCalculated with seacarb package in R
37Carbonate ion, standard deviation[CO3]2- std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
38Calcite saturation stateOmega CalGutiérrez-Zárate, CristinaCalculated with seacarb package in R
39Calcite saturation state, standard deviationOmega Cal std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
40Aragonite saturation stateOmega ArgGutiérrez-Zárate, CristinaCalculated with seacarb package in R
41Aragonite saturation state, standard deviationOmega Arg std dev±Gutiérrez-Zárate, CristinaCalculated with seacarb package in R
42SilicateSi(OH)4µmol/kgGutiérrez-Zárate, Cristina
43Phosphate[PO4]3-µmol/kgGutiérrez-Zárate, Cristina
44Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
47Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
51Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
53Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
55Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
57Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
59Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
14471 data points

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