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Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W (2025): Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.987275

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Published: 2025-11-07 • DOI registered: 2025-12-06

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Abstract:
In this study, we investigated the effects of increasing environmental PCO2 (ambient, 5000 and 10,000 µatm) on metabolism, oxidative stress and protein ubiquitination (an indicator of protein degradation) in whiteleg shrimp (Penaeus vannamei).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-07.
Keyword(s):
Animalia; Arthropoda; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Other studied parameter or process; Penaeus vannamei; Respiration; Single species
Related to:
Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W (2025): The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei. Journal of Experimental Biology, 228(16), jeb249906, https://doi.org/10.1242/jeb.249906
Source:
Sanders, Trystan (2025): Sanders_2025_JEB_data.xlsx [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.29927741.V1
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSanders, Trystan
2Species, unique identificationSpecies UIDSanders, Trystan
3Species, unique identification (URI)Species UID (URI)Sanders, Trystan
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Sanders, Trystan
5Treatment: partial pressure of carbon dioxideT:pCO2µatmSanders, Trystan
6Metabolic rate of oxygenMR O2µmol/h/gSanders, TrystanStandard
7Specific dynamic action, oxygen, magnitudeSDA O2 magµmol/gSanders, Trystan
8Protein carbonyl, per protein massProt carbo/protnmol/mgSanders, Trystan
9IntensityIntensitySanders, TrystanK48 Ubiquitin-conjugated protein 900 vs 10000
10IntensityIntensitySanders, TrystanK48 Ubiquitin-conjugated protein 900 vs 5000
11Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSanders, Trystan
12Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Sanders, Trystan
13Temperature, waterTemp°CSanders, Trystan
14Temperature, water, standard deviationTemp std dev±Sanders, Trystan
15SalinitySalSanders, Trystan
16Salinity, standard deviationSal std dev±Sanders, Trystan
17pH, NBS scalepH NBSSanders, Trystan
18pH, standard deviationpH std dev±Sanders, TrystanNBS scale
19Alkalinity, totalATµmol/lSanders, Trystan
20Alkalinity, total, standard deviationAT std dev±Sanders, Trystan
21Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
553 data points

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