/* DATA DESCRIPTION: Citation: Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W (2025): Seawater carbonate chemistry and protein oxidative damage and ubiquitination in Penaeus vannamei [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.987275 Abstract: In this study, we investigated the effects of increasing environmental PCO2 (ambient, 5000 and 10,000 µatm) on metabolism, oxidative stress and protein ubiquitination (an indicator of protein degradation) in whiteleg shrimp (Penaeus vannamei). This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-11-07. Keyword(s): Animalia; Arthropoda; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Other studied parameter or process; Penaeus vannamei; Respiration; Single species Related to: Sanders, Trystan; Derjean, Hélisoa Amadeus; Costello, Joseph L; Ellis, Robert P; Wilson, Rod W (2025): The effects of high seawater PCO2 on protein oxidative damage and ubiquitination in Penaeus vannamei. Journal of Experimental Biology, 228(16), jeb249906, https://doi.org/10.1242/jeb.249906 Source: Sanders, Trystan (2025): Sanders_2025_JEB_data.xlsx [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.29927741.V1 References: Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010 Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024 Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016 Related code / software: Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html Project(s): Ocean Acidification International Coordination Centre (OA-ICC) (URI: https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management) Parameter(s): Type of study (Study type) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Species, unique identification (Species UID) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Species, unique identification (URI) (Species UID (URI)) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Species, unique identification (Semantic URI) (Species UID (Semantic URI)) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Treatment: partial pressure of carbon dioxide [µatm] (T:pCO2) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Metabolic rate of oxygen [µmol/h/g] (MR O2) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) * COMMENT: Standard Specific dynamic action, oxygen, magnitude [µmol/g] (SDA O2 mag) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Protein carbonyl, per protein mass [nmol/mg] (Prot carbo/prot) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Intensity (Intensity) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) * COMMENT: K48 Ubiquitin-conjugated protein 900 vs 10000 Intensity (Intensity) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) * COMMENT: K48 Ubiquitin-conjugated protein 900 vs 5000 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [µatm] (pCO2water_SST_wet) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Partial pressure of carbon dioxide, standard deviation [±] (pCO2 std dev) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Temperature, water [°C] (Temp) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Temperature, water, standard deviation [±] (Temp std dev) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Salinity (Sal) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Salinity, standard deviation [±] (Sal std dev) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) pH, NBS scale (pH NBS) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) pH, standard deviation [±] (pH std dev) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) * COMMENT: NBS scale Alkalinity, total [µmol/l] (AT) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Alkalinity, total, standard deviation [±] (AT std dev) * PI: Sanders, Trystan (https://orcid.org/0000-0002-7605-0747, trystanbrett@gmail.com) Carbonate system computation flag (CSC flag) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) pH, total scale (pHT) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbon dioxide [µmol/kg] (CO2) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) [µatm] (fCO2water_SST_wet) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) [µatm] (pCO2water_SST_wet) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Bicarbonate ion [µmol/kg] ([HCO3]-) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbonate ion [µmol/kg] ([CO3]2-) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Carbon, inorganic, dissolved [µmol/kg] (DIC) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Alkalinity, total [µmol/kg] (AT) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Aragonite saturation state (Omega Arg) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) Calcite saturation state (Omega Cal) * PI: Yang, Yan (https://orcid.org/0000-0003-4900-5606, yangyan@xmu.edu.cn, http://mel.xmu.edu.cn/en/) * METHOD/DEVICE: Calculated using seacarb after Nisumaa et al. (2010) (URI: https://doi.org/10.5194/essd-2-167-2010) License: Creative Commons Attribution 4.0 International (CC-BY-4.0) (URI: https://creativecommons.org/licenses/by/4.0/) Status: Curation Level: Enhanced curation (URI: https://wiki.pangaea.de/wiki/Curation_levels) Size: 553 data points */ Study type Species UID Species UID (URI) Species UID (Semantic URI) T:pCO2 [µatm] MR O2 [µmol/h/g] (Standard) SDA O2 mag [µmol/g] Prot carbo/prot [nmol/mg] Intensity (K48 Ubiquitin-conjugated prot...) Intensity (K48 Ubiquitin-conjugated prot...) pCO2water_SST_wet [µatm] pCO2 std dev [±] Temp [°C] Temp std dev [±] Sal Sal std dev [±] pH NBS pH std dev [±] (NBS scale) AT [µmol/l] AT std dev [±] CSC flag pHT CO2 [µmol/kg] fCO2water_SST_wet [µatm] pCO2water_SST_wet [µatm] [HCO3]- [µmol/kg] [CO3]2- [µmol/kg] DIC [µmol/kg] AT [µmol/kg] Omega Arg Omega Cal laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 9.3 447.4 11.5 9.63 9.41 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 7.9 274.6 13.6 2.40 2.25 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 11.5 184.9 10.2 1.92 1.43 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 6.4 152.7 9.8 4.12 4.77 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 1.8 148.5 17.4 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 900 6.7 156.5 881 75 27.0 0.4 26.2 0.1 8.069 0.01 2912 136 26 7.92 21.71 768.32 770.72 2433.25 188.53 2643.50 2865.80 3.16 4.89 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 32.4 367.5 10.2 1.49 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 21.2 368.8 10.0 1.31 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 24.4 94.7 11.7 6.80 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 12.4 389.4 17.5 11.24 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 16.1 192.8 11.5 1.29 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 21.3 121.5 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 5000 5.6 292.0 4654 538 26.8 0.8 25.8 0.2 7.609 0.02 4919 82 26 7.46 118.88 4176.85 4189.99 4579.77 120.85 4819.50 4842.20 2.02 3.14 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 27.2 143.7 13.8 1.23 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 10.7 501.9 9.7 1.79 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 13.8 217.5 12.1 0.54 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 25.0 511.7 11.5 0.65 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 10.5 506.2 7.7 0.66 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 5.0 465.2 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11 laboratory Penaeus vannamei https://www.marinespecies.org/aphia.php?p=taxdetails&id=377748 urn:lsid:marinespecies.org:taxname:377748 10000 20.9 287.0 10413 2104 27.2 0.0 26.3 0.1 7.573 0.05 10079 441 26 7.42 262.51 9339.11 9368.52 9428.55 235.33 9926.40 9919.10 3.95 6.11