Citation:

PANGAEA.980487 (DOI registration in progress)

Name: Seawater carbonate chemistry and sex determination and reproduction of Portuguese oyster (Crassostrea angulata)
Published: 2025-04-02
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Crassostrea angulata; Field experiment; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Pacific; Reproduction; Single species; Tropical

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Published: 2025-04-02

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Abstract:

In this study, we investigated 1) the role of pH in sex determination (i.e., pH-mediated sex determination, namely,PSD); 2) the potential of PSD to be maintained across generations and in the natural environment; 3) the effects of low pH on reproductive traits, fecundity, and offspring development; and 4) the existence of candidates of sex-specific genes and the potential molecular mechanisms underpinning PSD. For this, we used the Portuguese oyster (Crassostrea angulata, also known as Magallana angulata), as a model system.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-04-01.

Keyword(s):

Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Crassostrea angulata; Field experiment; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Pacific; Reproduction; Single species; Tropical

Related to:

Dang, Xin; Zhang, Yang; Dupont, Sam; Gaitán-Espitia, Juan Diego; He, Yuan-Qiu; Wang, Hui Hui; Ellis, Robert P; Guo, Ximing; Parker, Laura M; Zhang, Rong Chao; Chung, Shiu C; Yu, Ziniu; Thiyagarajan, Vengatesen (2025): Low pH Means More Female Offspring: A Multigenerational Plasticity in the Sex Ratio of Marine Bivalves. Environmental Science & Technology, 59(2), 1308-1321, https://doi.org/10.1021/acs.est.4c07808

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Further details:

Dang, Xin (2023): Water record of immune response to transgenerational ocean acidification in Magallana angulata F2 generation during laboratory experiments in 2021/2022 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.963544

Dang, Xin (2023): Water record of Magallana angulata F0 generation exposed to low pH during laboratory experiments in 2020 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.962532

Dang, Xin (2023): Water record of Magallana angulata F1 generation during laboratory experiments in 2020/2021 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.963543

Dang, Xin (2024): Water record of Magallana angulata F2 generation exposed to transgenerational ocean acidification during laboratory experiments in 2021/2022 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.963547

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 21.370000 * Longitude: 110.740000

Date/Time Start: 2020-03-07T17:00:00 * Date/Time End: 2020-03-07T17:00:00

Event(s):

Magallana_angulata_F0 * Latitude: 21.370000 * Longitude: 110.740000 * Date/Time: 2020-03-07T17:00:00 * Location: Wuchuan, China * Method/Device: Sampling by hand (HAND)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Dang, Xin
2	Species, unique identification	Species UID		Dang, Xin
3	Species, unique identification (URI)	Species UID (URI)		Dang, Xin
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Dang, Xin
5	Identification	ID		Dang, Xin		Individual
6	Treatment: pH	T:pH		Dang, Xin		F0
7	Treatment: pH	T:pH		Dang, Xin		F1
8	Treatment: pH	T:pH		Dang, Xin		F2
9	Site	Site		Dang, Xin		GD=Guandu, ZJ=Zhanjiang
10	Treatment	Treat		Dang, Xin
11	Experiment	Exp		Dang, Xin
12	Survival	Survival	%	Dang, Xin
13	Size	Size	cm	Dang, Xin		Shell
14	Wet mass	Wet m	g	Dang, Xin
15	Wet mass	Wet m	g	Dang, Xin		meat
16	Ratio	Ratio	%	Dang, Xin		meat
17	Gender	Gender		Dang, Xin
18	Eggs	Eggs	#	Dang, Xin		per meat mass (g)
19	Number	No		Dang, Xin
20	Egg size	Egg size	µm	Dang, Xin
21	Replicate	Repl		Dang, Xin
22	Fertilization success rate	Fert success	%	Dang, Xin		for F2
23	Embriolarval development	Embriolarval dev	%	Dang, Xin		for F2
24	Female	Female	#	Dang, Xin		2 years old F1
25	Male	Male	#	Dang, Xin		2 years old F1
26	Individuals	Ind	#	Dang, Xin		total, 2 years old F1
27	Female	Female	%	Dang, Xin		2 years old F1
28	Male	m	%	Dang, Xin		2 years old F1
29	Female	Female	#	Dang, Xin		F2
30	Male	Male	#	Dang, Xin		F2
31	Individuals	Ind	#	Dang, Xin		F2
32	Female	Female	%	Dang, Xin		F2
33	Male	m	%	Dang, Xin		F2
34	pH, NBS scale	pH NBS		Dang, Xin		F0
35	pH, standard deviation	pH std dev	±	Dang, Xin		F0, NBS scale
36	Temperature, water	Temp	°C	Dang, Xin		F0
37	Temperature, water, standard deviation	Temp std dev	±	Dang, Xin		F0
38	Salinity	Sal		Dang, Xin		F0
39	Salinity, standard deviation	Sal std dev	±	Dang, Xin		F0
40	Alkalinity, total	AT	µmol/kg	Dang, Xin		F0
41	Alkalinity, total, standard deviation	AT std dev	±	Dang, Xin		F0
42	pH, NBS scale	pH NBS		Dang, Xin		F1
43	pH, standard deviation	pH std dev	±	Dang, Xin		F1, NBS scale
44	Temperature, water	Temp	°C	Dang, Xin		F1
45	Temperature, water, standard deviation	Temp std dev	±	Dang, Xin		F1
46	Salinity	Sal		Dang, Xin		F1
47	Salinity, standard deviation	Sal std dev	±	Dang, Xin		F1
48	Alkalinity, total	AT	µmol/kg	Dang, Xin		F1
49	Alkalinity, total, standard deviation	AT std dev	±	Dang, Xin		F1
50	pH, NBS scale	pH NBS		Dang, Xin		Field
51	pH, standard deviation	pH std dev	±	Dang, Xin		Field
52	Temperature, water	Temp	°C	Dang, Xin		Field
53	Temperature, water, standard deviation	Temp std dev	±	Dang, Xin		Field
54	Salinity	Sal		Dang, Xin		Field
55	Salinity, standard deviation	Sal std dev	±	Dang, Xin		Field
56	Alkalinity, total	AT	µmol/kg	Dang, Xin		Field
57	Alkalinity, total, standard deviation	AT std dev	±	Dang, Xin		Field
58	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
59	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
60	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
61	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
62	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
63	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
64	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
65	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
66	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
67	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F0
68	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
69	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
70	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
71	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
72	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
73	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
74	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
75	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1
76	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	F1

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

44777 data points

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