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Rehder, Linda (2025): Physiologial charaterization of the Arctic diatom Thalassisira hyalina under different acclimation temperatures [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.979803 (DOI registration in progress)

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Published: 2025-05-08

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Abstract:
This experiment aimed to understand a the high plasticity of Arctic diatoms towards ocean warming, with a special regard to regulatory mechanisms of photosynthetic and respiratory processes. We therefore assessed the physiological performance of the Arctic diatom Thalassiosira hyalina under sub-optimal (2°C), optimal (6°C) and supra-optimal (10°C) temperatures. The acclimation irradiance was set to 30 µmol photons m-2 s-1 under continuous illumination (24h) and nutrients were repleted. the experiment took place in Winter 2023/2024 in laboratories of the Alfred-Wegener-Institute Bremerhaven. We assessed growth rates, quotas of particulate organic carbon and chlorophyll a, photophyisology using fast repetition rate fluorometry (FRRF) following Schuback et al. 2021, and gas fluxes of O2 and CO2 corresponding to photosynthetic and respiratory processes using membrane-inlet mass-spectrometry (MIMS) following Fock and Sültemeyer 1989 and Rehder et al. 2023. MIMS measurements were done in pH buffered assay medium (pH 7.8) including carbonic anhydrase and equilibrated to ~20% 18O2, to distinguish between photosynthetic O2 production and respiratory O2 consumption in the light. Furthermore, both FRRF and MIMS measurements were performed in photosynthesis-irradiance assays to obtained maximal rates of electron transport, gross O2 production and gross C-fixation. The dataset indicates a metabolic coupling of chloroplasts and mitochondria, which likely reroutes excess reductant from the chloroplasts into mitochondrial respiration.
Keyword(s):
Arctic; C fixation; Diatom; Laboratory experiment; metabolic coupling; Photosynthesis; physiological plasticity; Respiration; Temperate
References:
Fock, H P; Sültemeyer, D F (1989): O2 Evolution and Uptake Measurements in Plant Cells by Mass Spectrometry. In: Linskens, H-F, Jackson, JF (eds.), Gases in Plant and Microbial Cells, Modern Methods of Plant Analysis, 9, Springer Berlin Heidelberg, Berlin, Heidelberg, 3-18, https://doi.org/10.1007/978-3-642-83346-5_1
Rehder, Linda; Rost, Björn; Rokitta, Sebastian D (2023): Abrupt and acclimation responses to changing temperature elicit divergent physiological effects in the diatom Phaeodactylum tricornutum. New Phytologist, 239(3), 1005-1013, https://doi.org/10.1111/nph.18982
Schuback, Nina; Tortell, Philippe Daniel; Berman-Frank, Ilana; Campbell, Douglas A; Ciotti, Aurea; Courtecuisse, Emilie; Erickson, Zachary K; Fujiki, Tetsuichi; Halsey, Kimberly H; Hickman, Anna E; Huot, Yannick; Gorbunov, Maxime Y; Hughes, David J; Kolber, Zbigniew S; Moore, C Mark; Oxborough, Kevin; Prášil, Ondřej; Robinson, Charlotte M; Ryan-Keogh, Thomas J; Silsbe, Greg; Simis, Stefan G H; Suggett, David J; Thomalla, Sandy J; Varkey, Deepa R (2021): Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations. Frontiers in Marine Science, 8, 690607, https://doi.org/10.3389/fmars.2021.690607
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ExperimentExpRehder, Linda
2Sampling date/time, experimentDate/time sampling expRehder, Linda
3Sample IDSample IDRehder, Linda
4Type of studyStudy typeRehder, Lindalaboratory bottle incubation, 2 L glass bottles (Schott instruments) continuously aerated by air containing a pCO2 of 400 µatm
5LaboratoryLabRehder, Linda
6Species, unique identificationSpecies UIDRehder, Linda
7StrainStrainRehder, Linda
8Treatment: temperatureT:temp°CRehder, Linda
9Treatment: light:dark cycleT:L:Dhh:hhRehder, Linda
10Treatment: light intensityT:Ioµmol/m2/sRehder, Linda
11Treatment: salinityT:salRehder, Linda
12Treatment: partial pressure of carbon dioxideT:pCO2µatmRehder, Linda
13MediumMediumRehder, Linda
14GenerationGeneration#Rehder, Linda# in acclimation
15Growth rateµ1/dayRehder, LindaDaily cell counting, Beckmann coulter Counter
16Carbon, organic, particulate, production per cellPOC prod/cellpg/#/dayRehder, LindaCalculated=µ*POC (pg cell-1 d-1)
17Carbon, organic, particulate, per cellPOC/cellpg/#Rehder, LindaElemental analyzer, EuroVector, EA 3000
18Chlorophyll a per cellChl a/cellpg/#Rehder, LindaLaboratory fluorometer, Turner, Trilogyincluding acidification step (Knap et al. 1996; https:
19Chlorophyll a/particulate organic carbon ratioChl a/POCpg/pgRehder, LindaCalculated
20Functional absorption cross sections of photosystem II reaction centersSigma PSIInm2/PSIIRehder, LindaFast repetition rate fluorometry, dark acclimated
21Optical absorption cross section of photosystem II reaction centersSigma LHCIInm2/PSIIRehder, LindaCalculated(sigma PSII)/(Fv/Fm)
22Time constant for the initial part of an single turnover relaxation phaseTauµsRehder, LindaFast repetition rate fluorometry, dark acclimated
23Maximum quantum yield of photosystem IIFv/FmRehder, LindaFast repetition rate fluorometry, dark acclimated
24Electron transport rate, relativerETRRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fittingat experimental irrandiance
25Electron transport rate, absoluteaETRe/PSII/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting after Trimborn et al. 2017at experimental irrandiance
26Light use efficiencyalphaµmol/m2/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates
27Light acclimation indexlkµmol photons/m2/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport ratesEk_abs
28Maximal absolute electron transport rateaETR maxe/PSII/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport ratesabs ETC Vmax
29Quantum yield of non photochemical non regulated energy dissipation of photosystem IIY(NO)Rehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates after Schuback et al. 2021at experimental irradiance
30Quantum yield of non photochemical non regulated energy dissipation of photosystem IIY(NO)Rehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates after Schuback et al. 2021at maximal irradiance
31Gross photosynthetic oxygen release rate, per chlorophyll agross PSO2µmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
32Net photosynthetic oxygen release rate, per chlorophyll anet PSO2µmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
33Gross photosynthetic carbon uptake rate, per chlorophyll agross PSCO2µmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)at experimental irradiance
34Net photosynthetic carbon uptake rate, per chlorophyll anet PSCO2µmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
35Photosynthetic quotientPQRehder, LindaCalculation according to Rehder et al. (2023)at experimental irradiance
36Gross photosynthetic oxygen release rate, per chlorophyll agross PSO2µmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at 150 µmol photons/m**2/s
37Gross photosynthetic carbon uptake rate, per chlorophyll agross PSCO2µmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)at 150 µmol photons/m**2/s
38Photosynthetic quotientPQRehder, LindaCalculation according to Rehder et al. (2023)at 150 µmol photons/m**2/s
39Respiratory uptake rate, oxygen, dark, per chlorophyll aResp O2 d/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986
40Respiratory uptake rate, oxygen, in light, per chlorophyll aResp O2 l/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
41Light enhanced dark respiration, oxygen, per chlorophyll aLEDR/Chl aµmol/mg/hRehder, LindaLEDR_Vexp (µmol O2 mg Chl a-1 h-1)
42Respiratory uptake rate, oxygen, in light, per chlorophyll aResp O2 l/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at 150 µmol photons/m**2/s
43Light enhanced dark respiration, oxygen, per chlorophyll aLEDR/Chl aµmol/mg/hRehder, LindaLEDR_V150 (µmol O2 mg Chl a-1 h-1)
44Respiratory release rate, carbon dioxide, dark, per chlorophyll aResp release CO2 d/Chl aµmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)
45Respiratory quotientRQRehder, LindaCalculation according to Rehder et al. (2023)dark
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
736 data points

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