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Rehder, Linda: Physiologial charaterization of the Arctic diatom Thalassisira hyalina under different acclimation temperatures [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.979803 (dataset in review)

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Abstract:
This experiment aimed to understand a the high plasticity of Arctic diatoms towards ocean warming, with a special regard to regulatory mechanisms of photosynthetic and respiratory processes. We therefore assessed the physiological performance of the Arctic diatom Thalassiosira hyalina under sub-optimal (2°C), optimal (6°C) and supra-optimal (10°C) temperatures. The acclimation irradiance was set to 30 µmol photons m-2 s-1 under continuous illumination (24h) and nutrients were repleted. the experiment took place in Winter 2023/2024 in laboratories of the Alfred-Wegener-Institute Bremerhaven. We assessed growth rates, quotas of particulate organic carbon and chlorophyll a, photophyisology using fast repetition rate fluorometry (FRRF) following Schuback et al. 2021, and gas fluxes of O2 and CO2 corresponding to photosynthetic and respiratory processes using membrane-inlet mass-spectrometry (MIMS) following Fock and Sültemeyer 1989 and Rehder et al. 2023. MIMS measurements were done in pH buffered assay medium (pH 7.8) including carbonic anhydrase and equilibrated to ~20% 18O2, to distinguish between photosynthetic O2 production and respiratory O2 consumption in the light. Furthermore, both FRRF and MIMS measurements were performed in photosynthesis-irradiance assays to obtained maximal rates of electron transport, gross O2 production and gross C-fixation. The dataset indicates a metabolic coupling of chloroplasts and mitochondria, which likely reroutes excess reductant from the chloroplasts into mitochondrial respiration.
Keyword(s):
Arctic; C fixation; Diatom; Laboratory experiment; metabolic coupling; Photosynthesis; physiological plasticity; Respiration; Temperate
References:
Fock, H P; Sültemeyer, D F (1989): O2 Evolution and Uptake Measurements in Plant Cells by Mass Spectrometry. In: Linskens, H-F, Jackson, JF (eds.), Gases in Plant and Microbial Cells, Modern Methods of Plant Analysis, 9, Springer Berlin Heidelberg, Berlin, Heidelberg, 3-18, https://doi.org/10.1007/978-3-642-83346-5_1
Rehder, Linda; Rost, Björn; Rokitta, Sebastian D (2023): Abrupt and acclimation responses to changing temperature elicit divergent physiological effects in the diatom Phaeodactylum tricornutum. New Phytologist, 239(3), 1005-1013, https://doi.org/10.1111/nph.18982
Schuback, Nina; Tortell, Philippe Daniel; Berman-Frank, Ilana; Campbell, Douglas A; Ciotti, Aurea; Courtecuisse, Emilie; Erickson, Zachary K; Fujiki, Tetsuichi; Halsey, Kimberly H; Hickman, Anna E; Huot, Yannick; Gorbunov, Maxime Y; Hughes, David J; Kolber, Zbigniew S; Moore, C Mark; Oxborough, Kevin; Prášil, Ondřej; Robinson, Charlotte M; Ryan-Keogh, Thomas J; Silsbe, Greg; Simis, Stefan G H; Suggett, David J; Thomalla, Sandy J; Varkey, Deepa R (2021): Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations. Frontiers in Marine Science, 8, 690607, https://doi.org/10.3389/fmars.2021.690607
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ExperimentExpRehder, Linda
2Sampling date/time, experimentDate/time sampling expRehder, Linda
3Sample IDSample IDRehder, Linda
4Type of studyStudy typeRehder, Lindalaboratory bottle incubation, 2 L glass bottles (Schott instruments) continuously aerated by air containing a pCO2 of 400 µatm
5LaboratoryLabRehder, Linda
6Species, unique identificationSpecies UIDRehder, Linda
7Species, unique identification (Semantic URI)Species UID (Semantic URI)Rehder, Linda
8Species, unique identification (URI)Species UID (URI)Rehder, Linda
9StrainStrainRehder, Linda
10Treatment: temperatureT:temp°CRehder, Linda
11Treatment: light:dark cycleT:L:Dhh:hhRehder, Linda
12Treatment: light intensityT:Ioµmol/m2/sRehder, Linda
13Treatment: salinityT:salRehder, Linda
14Treatment: partial pressure of carbon dioxideT:pCO2µatmRehder, Linda
15MediumMediumRehder, Linda
16GenerationGeneration#Rehder, Linda# in acclimation
17Growth rateµ1/dayRehder, LindaDaily cell counting, Beckmann coulter Counter
18Carbon, organic, particulate, net production, per cellNP POC/cellpg/#/dayRehder, LindaCalculated=µ*POC (pg cell-1 d-1)
19Carbon, organic, particulate, per cellPOC/cellpg/#Rehder, LindaElemental analyzer, EuroVector, EA 3000
20Chlorophyll a per cellChl a/cellpg/#Rehder, LindaLaboratory fluorometer, Turner, Trilogyincluding acidification step (Knap et al. 1996; https://doi.org/10.25607/obp-1409)
21Chlorophyll a/particulate organic carbon ratioChl a/POCpg/pgRehder, LindaCalculated
22Absorption cross section of PSII photochemistrynm**2/PSIIRehder, LindaFast repetition rate fluorometry, dark acclimated
23Time constant for the initial part of an single turnover relaxation phaseTauµsRehder, LindaFast repetition rate fluorometry, dark acclimated
24Quantum yield efficiency of photosystem IIFv/FmRehder, LindaFast repetition rate fluorometry, dark acclimated
25Electron transport rate, relativerETRRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fittingat experimental irrandiance
26Electron transport rate, absoluteaETRe/PSII/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting after Trimborn et al. 2017at experimental irrandiance
27Light use efficiencyalphaµmol/m2/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates
28Light acclimation indexlkµmol photons/m2/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates
29Maximal electron transport rateETR maxe/PSII/sRehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport ratesabs ETC Vmax
30Quantum yield of non photochemical non regulated energy dissipation of photosystem IIY(NO)Rehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates after Schuback et al. 2021at experimental irradiance
31Quantum yield of non photochemical non regulated energy dissipation of photosystem IIY(NO)Rehder, LindaFast repetition rate fluorometry, calculated from PI cuve fitting from absolute electron transport rates after Schuback et al. 2021at maximal irradiance
32Gross primary production of oxygen, per chlorophyll aGPP O2/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
33Net primary production of oxygen, per chlorophyll aNPP O2/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
34Gross carbon fixation rate, per chlorophyll aG C fix/Chl aµmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)at experimental irradiance
35Net carbon fixation rate, per chlorophyll aNet C fix/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
36Photosynthetic quotientPQRehder, LindaCalculation according to Rehder et al. (2023)at experimental irradiance
37Gross primary production of oxygen, per chlorophyll aGPP O2/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at 150 µmol photons/m**2/s
38Gross carbon fixation rate, per chlorophyll aG C fix/Chl aµmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)at 150 µmol photons/m**2/s
39Photosynthetic quotientPQRehder, LindaCalculation according to Rehder et al. (2023)at 150 µmol photons/m**2/s
40Respiration rate, oxygen, dark, per chlorophyll aResp O2 d/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986
41Respiration rate, oxygen, per chlorophyll aResp O2/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at experimental irradiance
42Respiration rate, oxygen, per chlorophyll aResp O2/Chl aµmol/mg/hRehder, LindaMembrane-inlet mass-spectrometry, after Sültemeyer & Fock 1986at 150 µmol photons/m**2/s
43Respiration rate, carbon dioxide, dark, per chlorophyll aResp CO2 d/Chl aµmol/mg/hRehder, LindaCalculation according to Rehder et al. (2023)
44Respiratory quotientRQRehder, LindaCalculation according to Rehder et al. (2023)dark
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
711 data points

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