Citation:

PANGAEA.978157 (DOI registration in progress)

Name: Seawater carbonate chemistry and egg quality and offspring performance of sea urchins (Paracentrotus lividus) within a volcanic vents area
Published: 2025-03-07
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Development; Echinodermata; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Organic toxins; Other studied parameter or process; Paracentrotus lividus; Reproduction; Single species; Temperate

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Published: 2025-03-07

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Abstract:

In this study, the effects of lower pH coupled with the presence of environmental contaminants were assessed on sea urchins (Paracentrotus lividus) collected outside and inside a volcanic CO2-vent system, where the mean ambient pH is 8.1 and 7.7, respectively.

Both groups of sea urchins were spawned, and offspring were reared at pH 8.1 and 7.7, and in the presence or absence of a mixture of 100 μg/L of glyphosate and its main metabolite aminomethylphosphonic acid. Offspring performance metrics (development, abnormalities, and growth) were investigated under the different exposure conditions.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-03-06.

Keyword(s):

Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Development; Echinodermata; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Organic toxins; Other studied parameter or process; Paracentrotus lividus; Reproduction; Single species; Temperate

Related to:

Asnicar, Davide (2025): Asnicar et al. - Ischia Volcanic Vents raw data [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.28061813

Asnicar, Davide; Cappelli, Costanza; Zanovello, Laura; Masiero, Luciano; Badocco, D; Marin, Maria Gabriella; Munari, M (2025): Adaptive resilience of sea urchins against seawater acidification: A study on egg quality and offspring performance within a volcanic vents area. Environmental Research, 272, 121143, https://doi.org/10.1016/j.envres.2025.121143

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 40.739650 * Median Longitude: 13.954440 * South-bound Latitude: 40.732750 * West-bound Longitude: 13.944500 * North-bound Latitude: 40.746550 * East-bound Longitude: 13.964380

Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00

Event(s):

Castello_Aragonese_of_Ischia * Latitude: 40.732750 * Longitude: 13.964380 * Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00

S_Pietro * Latitude: 40.746550 * Longitude: 13.944500 * Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Asnicar, Davide
2	Type of study	Study type		Asnicar, Davide
3	Species, unique identification	Species UID		Asnicar, Davide
4	Species, unique identification (URI)	Species UID (URI)		Asnicar, Davide
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Asnicar, Davide
6	Project	Project		Asnicar, Davide
7	Site	Site		Asnicar, Davide		Adult sampling
8	Identification	ID		Asnicar, Davide		Female
9	Eggs	Eggs	#	Asnicar, Davide		released
10	Diameter	Ø	µm	Asnicar, Davide
11	Dry mass	dm	µg	Asnicar, Davide		Egg
12	Lipids per egg	Lipids/egg	ng/#	Asnicar, Davide
13	Total protein per egg	Prot tot/egg	ng/#	Asnicar, Davide
14	Total carbohydrate per egg	CHO tot/egg	ng/#	Asnicar, Davide
15	Lipids, energy per egg	Lipid E/egg	J/#	Asnicar, Davide
16	Proteins, energy per egg	Protein E/egg	J/#	Asnicar, Davide
17	Carbohydrates, energy per egg	CHO E/egg	J/#	Asnicar, Davide
18	Total energy per egg	E tot/egg	mJ/#	Asnicar, Davide
19	Fatty acid, common name	FA common		Asnicar, Davide
20	Fatty acids	Fatty acids	%	Asnicar, Davide
21	Time in hours	Time	h	Asnicar, Davide		post-fertilization
22	Treatment: pH	T:pH		Asnicar, Davide
23	Treatment	Treat		Asnicar, Davide		Gly_AMPA_mix presence
24	Replicate	Repl		Asnicar, Davide
25	Larval stages	Larva	%	Asnicar, Davide		Pluteus
26	Larval stages	Larva	%	Asnicar, Davide		Early_pluteus
27	Larval stages	Larva	%	Asnicar, Davide		Prism
28	Larval stages	Larva	%	Asnicar, Davide		Gastrula
29	Larval stages	Larva	%	Asnicar, Davide		Blastula
30	Abnormality	Abn	%	Asnicar, Davide		echinopluteus
31	Length	l	µm	Asnicar, Davide		Somatic rod length
32	Length	l	µm	Asnicar, Davide		Postoral rod length
33	Cadmium	Ca	mmol/kg	Asnicar, Davide
34	Salinity	Sal		Asnicar, Davide
35	Temperature, water	Temp	°C	Asnicar, Davide
36	Alkalinity, total	AT	µmol/kg	Asnicar, Davide
37	pH, total scale	pHT		Asnicar, Davide
38	Carbon, inorganic, dissolved	DIC	µmol/kg	Asnicar, Davide
39	Bicarbonate ion	[HCO3]-	µmol/kg	Asnicar, Davide
40	Carbonate ion	[CO3]2-	µmol/kg	Asnicar, Davide
41	Carbon dioxide	CO2	µmol/kg	Asnicar, Davide
42	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Asnicar, Davide
43	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Asnicar, Davide		at 20 C
44	Calcite saturation state	Omega Cal		Asnicar, Davide
45	Aragonite saturation state	Omega Arg		Asnicar, Davide
46	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
49	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
53	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

29685 data points

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