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Asnicar, Davide; Cappelli, Costanza; Zanovello, Laura; Masiero, Luciano; Badocco, D; Marin, Maria Gabriella; Munari, M (2025): Seawater carbonate chemistry and egg quality and offspring performance of sea urchins (Paracentrotus lividus) within a volcanic vents area [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.978157

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Published: 2025-03-07 • DOI registered: 2025-04-05

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Abstract:
In this study, the effects of lower pH coupled with the presence of environmental contaminants were assessed on sea urchins (Paracentrotus lividus) collected outside and inside a volcanic CO2-vent system, where the mean ambient pH is 8.1 and 7.7, respectively.
Both groups of sea urchins were spawned, and offspring were reared at pH 8.1 and 7.7, and in the presence or absence of a mixture of 100 μg/L of glyphosate and its main metabolite aminomethylphosphonic acid. Offspring performance metrics (development, abnormalities, and growth) were investigated under the different exposure conditions.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-03-06.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Development; Echinodermata; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Organic toxins; Other studied parameter or process; Paracentrotus lividus; Reproduction; Single species; Temperate
Related to:
Asnicar, Davide (2025): Asnicar et al. - Ischia Volcanic Vents raw data [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.28061813
Asnicar, Davide; Cappelli, Costanza; Zanovello, Laura; Masiero, Luciano; Badocco, D; Marin, Maria Gabriella; Munari, M (2025): Adaptive resilience of sea urchins against seawater acidification: A study on egg quality and offspring performance within a volcanic vents area. Environmental Research, 272, 121143, https://doi.org/10.1016/j.envres.2025.121143
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Median Latitude: 40.739650 * Median Longitude: 13.954440 * South-bound Latitude: 40.732750 * West-bound Longitude: 13.944500 * North-bound Latitude: 40.746550 * East-bound Longitude: 13.964380
Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00
Event(s):
Castello_Aragonese_of_Ischia * Latitude: 40.732750 * Longitude: 13.964380 * Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00
S_Pietro * Latitude: 40.746550 * Longitude: 13.944500 * Date/Time Start: 2019-06-01T00:00:00 * Date/Time End: 2019-06-30T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventAsnicar, Davide
2Type of studyStudy typeAsnicar, Davide
3Species, unique identificationSpecies UIDAsnicar, Davide
4Species, unique identification (URI)Species UID (URI)Asnicar, Davide
5Species, unique identification (Semantic URI)Species UID (Semantic URI)Asnicar, Davide
6ProjectProjectAsnicar, Davide
7SiteSiteAsnicar, DavideAdult sampling
8IdentificationIDAsnicar, DavideFemale
9EggsEggs#Asnicar, Davidereleased
10DiameterصmAsnicar, Davide
11Dry massdmµgAsnicar, DavideEgg
12Lipids per eggLipids/eggng/#Asnicar, Davide
13Total protein per eggProt tot/eggng/#Asnicar, Davide
14Total carbohydrate per eggCHO tot/eggng/#Asnicar, Davide
15Lipids, energy per eggLipid E/eggJ/#Asnicar, Davide
16Proteins, energy per eggProtein E/eggJ/#Asnicar, Davide
17Carbohydrates, energy per eggCHO E/eggJ/#Asnicar, Davide
18Total energy per eggE tot/eggmJ/#Asnicar, Davide
19Fatty acid, common nameFA commonAsnicar, Davide
20Fatty acidsFatty acids%Asnicar, Davide
21Time in hoursTimehAsnicar, Davidepost-fertilization
22Treatment: pHT:pHAsnicar, Davide
23TreatmentTreatAsnicar, DavideGly_AMPA_mix presence
24ReplicateReplAsnicar, Davide
25Larval stagesLarva%Asnicar, DavidePluteus
26Larval stagesLarva%Asnicar, DavideEarly_pluteus
27Larval stagesLarva%Asnicar, DavidePrism
28Larval stagesLarva%Asnicar, DavideGastrula
29Larval stagesLarva%Asnicar, DavideBlastula
30AbnormalityAbn%Asnicar, Davideechinopluteus
31LengthlµmAsnicar, DavideSomatic rod length
32LengthlµmAsnicar, DavidePostoral rod length
33CadmiumCammol/kgAsnicar, Davide
34SalinitySalAsnicar, Davide
35Temperature, waterTemp°CAsnicar, Davide
36Alkalinity, totalATµmol/kgAsnicar, Davide
37pH, total scalepHTAsnicar, Davide
38Carbon, inorganic, dissolvedDICµmol/kgAsnicar, Davide
39Bicarbonate ion[HCO3]-µmol/kgAsnicar, Davide
40Carbonate ion[CO3]2-µmol/kgAsnicar, Davide
41Carbon dioxideCO2µmol/kgAsnicar, Davide
42Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmAsnicar, Davide
43Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmAsnicar, Davideat 20 C
44Calcite saturation stateOmega CalAsnicar, Davide
45Aragonite saturation stateOmega ArgAsnicar, Davide
46Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
29685 data points

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