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Asnicar, Davide; Zanovello, Laura; Badocco, D; Munari, M; Marin, Maria Gabriella (2024): Seawater carbonate chemistry and transgenerational responses to a multiple stressor scenario in sea urchins (Paracentrotus lividus) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969570 (DOI registration in progress)

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Abstract:
Here we compared the transgenerational responses to a multiple stressor scenario in sea urchins (Paracentrotus lividus) that experienced different environments since their settlement: i.e., animals from a highly variable environment, such as the Venice lagoon, versus animals from a coastal area with prevailing oligotrophic conditions in the Northern Adriatic Sea. After long-term maintenance (2 and 6 months) of adult sea urchins at natural and - 0.4 units reduced pH, the F1 generations were obtained. Embryos were reared under four experimental conditions: natural and - 0.4 pH both in the absence and in the presence of an emerging contaminants' mixture (glyphosate and aminomethylphosphonic acid at environmentally relevant concentrations, 100 μg/L).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-05.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Development; Echinodermata; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Organic toxins; Paracentrotus lividus; Single species; Temperate
Related to:
Asnicar, Davide; Zanovello, Laura; Badocco, D; Munari, M; Marin, Maria Gabriella (2022): Different ecological histories of sea urchins acclimated to reduced pH influence offspring response to multiple stressors. Environmental Research, 212, 113131, https://doi.org/10.1016/j.envres.2022.113131
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Median Latitude: 45.476500 * Median Longitude: 12.980950 * South-bound Latitude: 45.228000 * West-bound Longitude: 12.270000 * North-bound Latitude: 45.725000 * East-bound Longitude: 13.691900
Event(s):
Gulf_of_Trieste * Latitude: 45.725000 * Longitude: 13.691900 * Method/Device: Experiment (EXP) * Comment: Where the studied organisms were collected
Venice_Lagoon_OA * Latitude: 45.228000 * Longitude: 12.270000 * Method/Device: Experiment (EXP) * Comment: Where the studied organisms were collected
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventAsnicar, Davide
2Type of studyStudy typeAsnicar, Davide
3Species, unique identificationSpecies UIDAsnicar, Davide
4Species, unique identification (URI)Species UID (URI)Asnicar, Davide
5Species, unique identification (Semantic URI)Species UID (Semantic URI)Asnicar, Davide
6FigureFigAsnicar, Davide
7SiteSiteAsnicar, Davide
8Experiment durationExp durationmonthsAsnicar, DavideAdult Exposure
9TreatmentTreatAsnicar, DavideAdult
10IdentificationIDAsnicar, Davidetank
11IdentificationIDAsnicar, DavideFemale
12TreatmentTreatAsnicar, DavideEmbryo
13TreatmentTreatAsnicar, DavideMix Presence
14Experiment durationExp durationhAsnicar, DavideEmbryo Exposure
15ReplicateReplAsnicar, Davide
16Larval stagesLarva%Asnicar, DavidePluteus
17Larval stagesLarva%Asnicar, DavideEarly_pluteus
18Larval stagesLarva%Asnicar, DavidePrism
19Larval stagesLarva%Asnicar, DavideGastrula
20Larval stagesLarva%Asnicar, DavideBlastula
21Egg stagesEgg%Asnicar, Davide
22AbnormalityAbn%Asnicar, Davide
23LarvaeLarvaeAsnicar, Davide
24LengthlµmAsnicar, DavideSomatic rod
25LengthlµmAsnicar, DavidePostoral rod
26pHpHAsnicar, Davidetotal scale, adult
27pH, standard deviationpH std dev±Asnicar, Davidetotal scale, adult
28Temperature, waterTemp°CAsnicar, Davideadult
29Temperature, water, standard deviationTemp std dev±Asnicar, Davideadult
30SalinitySalAsnicar, Davideadult
31Salinity, standard deviationSal std dev±Asnicar, Davideadult
32Oxygen, gasO2ppmvAsnicar, Davideadult
33Oxygen, standard deviationO2 std dev±Asnicar, Davideadult
34Alkalinity, totalATµmol/kgAsnicar, Davideadult
35Alkalinity, total, standard deviationAT std dev±Asnicar, Davideadult
36Carbon, inorganic, dissolvedDICµmol/kgAsnicar, Davideadult
37Carbon, inorganic, dissolved, standard deviationDIC std dev±Asnicar, Davideadult
38Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmAsnicar, Davideadult
39Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Asnicar, Davideadult
40Calcite saturation stateOmega CalAsnicar, Davideadult
41Calcite saturation state, standard deviationOmega Cal std dev±Asnicar, Davideadult
42Aragonite saturation stateOmega ArgAsnicar, Davideadult
43Aragonite saturation state, standard deviationOmega Arg std dev±Asnicar, Davideadult
44pHpHAsnicar, Davidetotal scale, embryo
45pH, standard deviationpH std dev±Asnicar, Davidetotal scale, embryo
46Alkalinity, totalATµmol/kgAsnicar, Davideembryo
47Alkalinity, total, standard deviationAT std dev±Asnicar, Davideembryo
48Carbon, inorganic, dissolvedDICµmol/kgAsnicar, Davideembryo
49Carbon, inorganic, dissolved, standard deviationDIC std dev±Asnicar, Davideembryo
50Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmAsnicar, Davideembryo
51Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Asnicar, Davideembryo
52Calcite saturation stateOmega CalAsnicar, Davideembryo
53Calcite saturation state, standard deviationOmega Cal std dev±Asnicar, Davideembryo
54Aragonite saturation stateOmega ArgAsnicar, Davideembryo
55Aragonite saturation state, standard deviationOmega Arg std dev±Asnicar, Davideembryo
56Temperature, waterTemp°CAsnicar, Davideembryo
57Temperature, water, standard deviationTemp std dev±Asnicar, Davideembryo
58SalinitySalAsnicar, Davideembryo
59Salinity, standard deviationSal std dev±Asnicar, Davideembryo
60Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
62Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
63Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
64Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
65Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
66Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
67Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
68Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)adult
69Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
70Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
71Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
72Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
73Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
74Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
75Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
76Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)embryo
Size:
3935156 data points

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