Coulmance, Floriane; Akkaynak, Derya; Le Poul, Yann; Hoppner, Marc P; McMillan, W Owen; Puebla, Oscar (2025): Photographs used to develop a standardized and fully quantitative pipeline for color pattern analysis in coral reef fishes [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.974445
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Published: 2025-04-15 • DOI registered: 2025-04-16
Abstract:
This dataset comprises 113 live photographs of hamlets (Hypoplectrus spp.). The photographs are in raw format .CR2 from a Canon camera. This dataset spans 13 hamlet species from 4 locations in the wider Caribbean: Panama, Belize, Puerto Rico and the Florida Keys (USA). Photographs were taken in situ underwater. This dataset was used in a newly developed quantitative image analysis pipeline to assess hamlets color pattern variations. Further combined with genetics, the authors detailed the genetic basis of color pattern variation in hamlets.
Keyword(s):
Related to:
Coulmance, Floriane; Akkaynak, Derya; Le Poul, Yann; Höppner, Marc P; McMillan, W Owen; Puebla, Oscar (2024): Phenotypic and genomic dissection of colour pattern variation in a reef fish radiation. Molecular Ecology, 33(4), e17047, https://doi.org/10.1111/mec.17047
Coulmance, Floriane; Heckwolf, Melanie; Gismann, Jakob; Kafle, Tane; Domínguez-Domínguez, Omar; Awhida, Karim; Helmkampf, Martin; McMillan, W Owen; Puebla, Oscar: Phenotypic variation within and between species during early radiation stages [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.974433
Coverage:
Median Latitude: 16.908024 * Median Longitude: -78.933618 * South-bound Latitude: 9.332778 * West-bound Longitude: -88.144170 * North-bound Latitude: 24.752580 * East-bound Longitude: -67.056430
Date/Time Start: 2017-02-04T00:00:00 * Date/Time End: 2017-12-07T00:00:00
Event(s):
Comment:
The tan hamlet has not been described yet. The species name is therefore only given as Hypoplectrus.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Coulmance, Floriane | |||
| 2 | Sample code/label | Sample label | Coulmance, Floriane | |||
| 3 | Identification | ID | Coulmance, Floriane | |||
| 4 | Species, unique identification | Species UID | Coulmance, Floriane | Hypoplectrus (sp. 1)/Tan hamlet (undescribed) | ||
| 5 | Species, unique identification (Semantic URI) | Species UID (Semantic URI) | Coulmance, Floriane | Hypoplectrus (sp. 1)/Tan hamlet (undescribed) | ||
| 6 | Species, unique identification (URI) | Species UID (URI) | Coulmance, Floriane | Hypoplectrus (sp. 1)/Tan hamlet (undescribed) | ||
| 7 | Location | Location | Coulmance, Floriane | |||
| 8 | Method comment | Method comm | Coulmance, Floriane | |||
| 9 | Image, under water | IMAGE water | Coulmance, Floriane | Digital camera, Canon, EOS M3 | Raw Photo | |
| 10 | LATITUDE | Latitude | Coulmance, Floriane | Geocode | ||
| 11 | LONGITUDE | Longitude | Coulmance, Floriane | Geocode | ||
| 12 | Elevation description | Elevation descr | Coulmance, Floriane | |||
| 13 | DATE/TIME | Date/Time | Coulmance, Floriane | Geocode – date |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Basic curation (CurationLevelB)
Size:
791 data points