Citation:

PANGAEA.974439

Name: Seawater carbonate chemistry and morphology and nutrient physiology of the cosmopolitan marine diatom Thalassiosira rotula
Published: 2025-01-09
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Heterokontophyta; Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Other metabolic rates; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species; Thalassiosira rotula

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2025-01-09 • DOI registered: 2025-02-07

RIS Citation BibTeX Citation Text Citation Share

Abstract:

We investigated the effect of decreased pH on the morphology and nutrient physiology of the cosmopolitan marine diatom Thalassiosira rotula (CCMP3362) by acclimating unialgal cultures to two different CO2 gas concentrations under optimal light, temperature and nutrient conditions.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from UVic Research Data Collection (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-01-08.

Keyword(s):

Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Heterokontophyta; Laboratory experiment; Laboratory strains; Not applicable; Ocean acidification; Other metabolic rates; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species; Thalassiosira rotula

Related to:

Wyatt, Shea N; McNabb, Brandon J; Varela, Diana E (2024): Morphological and physiological responses of the cosmopolitan marine diatom Thalassiosira rotula to acidification. Diatom Research, 39(2), 61-74, https://doi.org/10.1080/0269249X.2024.2369049

Source:

Wyatt, Shea N; McNabb, Brandon J; Varela, Diana E (2024): Morphological and physiological responses of the cosmopolitan marine diatom Thalassiosira rotula to acidification [dataset]. Borealis, https://doi.org/10.5683/SP3/IUEQIN

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Varela, Diana E
2	Species, unique identification	Species UID		Varela, Diana E
3	Species, unique identification (URI)	Species UID (URI)		Varela, Diana E
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Varela, Diana E
5	Sample ID	Sample ID		Varela, Diana E
6	Treatment: partial pressure of carbon dioxide	T:pCO2	µatm	Varela, Diana E
7	pH, total scale	pHT		Varela, Diana E
8	Growth rate	µ	1/day	Varela, Diana E
9	Cell density	Cells	#/ml	Varela, Diana E
10	Cell, length	Cell l	µm	Varela, Diana E
11	Cell, diameter	Cell diam	µm	Varela, Diana E
12	Cell surface area	Cell surface area	µm²	Varela, Diana E
13	Cell biovolume	Cell biovol	µm³	Varela, Diana E
14	Cell surface area/cell volume ratio	Cell SA/cell vol	1/µm	Varela, Diana E
15	Chlorophyll a	Chl a	µg/l	Varela, Diana E
16	Carbon, organic, particulate	POC	µmol/l	Varela, Diana E
17	Nitrogen, organic, particulate	PON	µmol/l	Varela, Diana E
18	Biogenic silica	bSiO2	µmol/l	Varela, Diana E
19	Carbon/Nitrogen ratio	C/N	mol/mol	Varela, Diana E
20	Silicon/Carbon, molar ratio	Si/C		Varela, Diana E
21	Silicon/Nitrogen, molar ratio	Si/N		Varela, Diana E
22	Carbon, organic, particulate/Chlorophyll a ratio	POC/Chl a		Varela, Diana E
23	Carbon utilization rate	rhoC	µmol/l/day	Varela, Diana E
24	Nitrate utilization rate	rhoNO3	µmol/l/day	Varela, Diana E
25	Silicon utilization rate	rhoSi	µmol/l/day	Varela, Diana E
26	Carbon utilization/nitrate utilization ratio	rhoC/rhoNO3		Varela, Diana E
27	Silicon utilization/carbon utilization ratio	rhoSi/rhoC		Varela, Diana E
28	Silicon utilization/nitrate utilization, ratio	rhoSi/rhoNO3		Varela, Diana E
29	Chlorophyll a	Chl a	fg/µm³	Varela, Diana E
30	Carbon, organic, particulate	POC	fg/µm³	Varela, Diana E
31	Nitrogen, organic, particulate	PON	fg/µm³	Varela, Diana E
32	Biogenic silica quota, per volume	bSiO2/V	fmol/µm³	Varela, Diana E
33	Biogenic silica per surface area	bSiO2/SA	fmol/µm*2	Varela, Diana E
34	Carbon utilization rate, per volume	rhoC/V	fmol/µm³/day	Varela, Diana E
35	Nitrate utilization rate, per volume	rhoNO3/V	fmol/µm³/day	Varela, Diana E
36	Silicon utilization rate, per volume	rhoSi/V	fmol/µm³/day	Varela, Diana E
37	Chlorophyll a per cell	Chl a/cell	fmol/#	Varela, Diana E
38	Carbon, organic, particulate, per cell	POC/cell	ng/#	Varela, Diana E
39	Nitrogen, organic, particulate, per cell	PON/cell	pg/#	Varela, Diana E
40	Biogenic silica, per cell	bSiO2/cell	fmol/#	Varela, Diana E
41	Carbon utilization rate, per cell	rhoC/cell	pmol/#/day	Varela, Diana E
42	Nitrate utilization rate, per cell	rhoNO3/cell	pmol/#/day	Varela, Diana E
43	Silicon utilization rate, per cell	rhoSi/cell	pmol/#/day	Varela, Diana E
44	Chlorophyll a, per mass carbon	Chl a/C	µg/µmol	Varela, Diana E
45	Carbon, organic, particulate, per mass carbon	POC/C	µmol/µmol	Varela, Diana E
46	Nitrogen, organic, particulate, per mass carbon	PON/C	µmol/µmol	Varela, Diana E
47	Biogenic silica quota, per mass carbon	bSiO2/C	µmol/µmol	Varela, Diana E
48	Carbon utilization rate, per mass carbon	rhoC/C	µmol/µmol/day	Varela, Diana E
49	Nitrate utilization rate, per mass carbon	rhoNO3/C	µmol/µmol/day	Varela, Diana E
50	Silicon utilization rate, per mass carbon	rhoSi/C	µmol/µmol/day	Varela, Diana E
51	Temperature, water	Temp	°C	Varela, Diana E
52	Salinity	Sal		Varela, Diana E
53	Phosphate	[PO4]3-	µmol/kg	Varela, Diana E
54	Silicate	Si(OH)4	µmol/kg	Varela, Diana E
55	pH, total scale	pHT		Varela, Diana E	Potentiometric
56	pH, standard deviation	pH std dev	±	Varela, Diana E
57	Carbon, inorganic, dissolved	DIC	µmol/kg	Varela, Diana E
58	Alkalinity, total	AT	µmol/kg	Varela, Diana E
59	pH, total scale	pHT		Varela, Diana E	Calculated using CO2SYS
60	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Varela, Diana E	Calculated using CO2SYS	using CT and TA measurements
61	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Varela, Diana E	Calculated using CO2SYS	using only the TA and measured electrode pHT
62	Carbonate system computation flag	CSC flag		Yang, Yan
63	pH, total scale	pHT		Yang, Yan
64	Carbon dioxide	CO2	µmol/kg	Yang, Yan
65	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan
66	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan
67	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan
68	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan
69	Aragonite saturation state	Omega Arg		Yang, Yan
70	Calcite saturation state	Omega Cal		Yang, Yan

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

403 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 Sample ID	6 T:pCO2 [µatm]	7 pHT	8 µ [1/day]	9 Cells [#/ml]	10 Cell l [µm]	11 Cell diam [µm]	12 Cell surface area [µm²]	13 Cell biovol [µm³]	14 Cell SA/cell vol [1/µm]	15 Chl a [µg/l]	16 POC [µmol/l]	17 PON [µmol/l]	18 bSiO2 [µmol/l]	19 C/N [mol/mol]	20 Si/C	21 Si/N	22 POC/Chl a	23 rhoC [µmol/l/day]	24 rhoNO3 [µmol/l/day]	25 rhoSi [µmol/l/day]	26 rhoC/rhoNO3	27 rhoSi/rhoC	28 rhoSi/rhoNO3	29 Chl a [fg/µm³]	30 POC [fg/µm³]	31 PON [fg/µm³]	32 bSiO2/V [fmol/µm³]	33 bSiO2/SA [fmol/µm*2]	34 rhoC/V [fmol/µm³/day]	35 rhoNO3/V [fmol/µm³/day]	36 rhoSi/V [fmol/µm³/day]	37 Chl a/cell [fmol/#]	38 POC/cell [ng/#]	39 PON/cell [pg/#]	40 bSiO2/cell [fmol/#]	41 rhoC/cell [pmol/#/day]	42 rhoNO3/cell [pmol/#/day]	43 rhoSi/cell [pmol/#/day]	44 Chl a/C [µg/µmol]	45 POC/C [µmol/µmol]	46 PON/C [µmol/µmol]	47 bSiO2/C [µmol/µmol]	48 rhoC/C [µmol/µmol/day]	49 rhoNO3/C [µmol/µmol/day]	50 rhoSi/C [µmol/µmol/day]	51 Temp [°C]	52 Sal	53 [PO4]3- [µmol/kg]	54 Si(OH)4 [µmol/kg]	55 pHT (Potentiometric)	56 pH std dev [±]	57 DIC [µmol/kg]	58 AT [µmol/kg]	59 pHT (Calculated using CO2SYS)	60 pCO2water_SST_wet [µatm] (using CT and TA measurements,...)	61 pCO2water_SST_wet [µatm] (using only the TA and measure...)	62 CSC flag	63 pHT	64 CO2 [µmol/kg]	65 fCO2water_SST_wet [µatm]	66 pCO2water_SST_wet [µatm]	67 [HCO3]- [µmol/kg]	68 [CO3]2- [µmol/kg]	69 Omega Arg	70 Omega Cal
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	LC-1	500	7.93	0.654	451.7	16.0	21.2	1801.2	5922.5	0.3209	2.11	39.5	6.7	1.132	5.8694	0.0287	0.1683	224.7780	13.6227	2.1984	1.7069	6.1967	0.1253	0.7764	0.788	14.76	2.51	0.423	1.391	5.09	0.82	0.638	4.67	87.38	14.89	2505.25	30.16	4.87	3.78	0.053	1	0.170	0.029	0.345	0.056	0.043	14.60	30.50	18.50	82.90	7.96	0.01	2035.90	2174.50	7.88	597.00	500.00	15	7.88	23.11	594.41	596.57	1917.12	95.67	1.49	2.35
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	LC-2	500	7.97	0.906	631.0	14.5	20.3	1595.6	4871.1	0.3419	3.95	52.8	12.6	1.266	4.1710	0.0240	0.1001	160.4627	29.5871	3.5461	3.4452	8.3435	0.1164	0.9715	1.280	17.17	4.12	0.412	1.257	9.63	1.15	1.121	6.26	83.61	20.05	2005.83	46.89	5.62	5.46	0.075	1	0.240	0.024	0.561	0.067	0.065	14.60	30.50	18.50	82.90	7.96	0.01	2035.90	2174.50	7.88	597.00	500.00	15	7.88	23.11	594.41	596.57	1917.12	95.67	1.49	2.35
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	LC-3	500	7.99	0.922	1808.0	15.4	20.3	1658.8	5259.0	0.3389		91.9	15.5	2.956	5.9442	0.0322	0.1911		68.0501	9.8276	4.8563	6.9244	0.0714	0.4941		9.67	1.63	0.311	0.986	7.16	1.03	0.511		50.84	8.55	1634.82	37.64	5.44	2.69		1	0.168	0.032	0.740	0.107	0.053	14.60	30.50	18.50	82.90	7.96	0.01	2035.90	2174.50	7.88	597.00	500.00	15	7.88	23.11	594.41	596.57	1917.12	95.67	1.49	2.35
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	HC-1	821	7.76	0.824	1059.0	14.9	20.1	1603.3	5003.3	0.3427	5.93	71.6	12.6	1.763	5.6818	0.0246	0.1399	144.9766	41.4556	5.0172	3.1722	8.2627	0.0765	0.6323	1.120	13.51	2.38	0.333	1.038	7.82	0.95	0.599	5.60	67.61	11.90	1664.89	39.15	4.74	3.00	0.083	1	0.176	0.025	0.579	0.070	0.044	14.60	30.50	18.50	79.50	7.75	0.00	2110.00	2177.50	7.66	1045.00	821.00	15	7.66	40.47	1040.83	1044.63	2009.50	60.03	0.94	1.47
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	HC-2	821	7.75	0.840	1960.3	14.3	18.6	1400.6	4037.4	0.3629	7.58	91.7	17.5	2.924	5.2511	0.0319	0.1675	145.2718	65.1267	8.0535	5.9923	8.0868	0.0920	0.7441	0.958	11.58	2.21	0.369	1.065	8.23	1.02	0.757	3.87	46.77	8.91	1491.51	33.22	4.11	3.06	0.083	1	0.190	0.032	0.710	0.088	0.065	14.60	30.50	18.50	79.50	7.75	0.00	2110.00	2177.50	7.66	1045.00	821.00	15	7.66	40.47	1040.83	1044.63	2009.50	60.03	0.94	1.47
laboratory	Thalassiosira rotula	marinespecies.org	urn:lsid:marinespecies.org:taxname:148942	HC-3	821	7.75	0.918	2601.0	13.3	19.0	1379.7	3902.3	0.3659	12.30	105.8	25.2	3.540	4.1910	0.0335	0.1403	103.2490	74.0008	9.9596	5.1764	7.4301	0.0700	0.5197	1.210	10.42	2.49	0.349	0.986	7.29	0.98	0.510	4.73	40.66	9.70	1361.03	28.45	3.83	1.99	0.116	1	0.239	0.033	0.700	0.094	0.049	14.60	30.50	18.50	79.50	7.75	0.00	2110.00	2177.50	7.66	1045.00	821.00	15	7.66	40.47	1040.83	1044.63	2009.50	60.03	0.94	1.47