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Soor, Deep; Tigert, Liam R; Khodikian, Elissa; Bozai, Arsheen; Yoon, Gwangseok R; Porteus, Cosima S (2024): Seawater carbonate chemistry and changes in gill neuroepithelial cells and morphology of threespine stickleback (Gasterosteus aculeatus) [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.973195 (DOI registration in progress)

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Abstract:
In this study, the neuroepithelial cells (NECs) of marine threespine sticklebacks (Gasterosteus aculeatus) were characterized using immunohistochemistry. We then determined if there were changes in NEC size and density, and in gill morphology in response to either mild (10 kPa) or moderate (6.8 kPa) hypoxia and two levels of elevated CO2 (1,500 and 3,000 µatm).
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-10-28.
Keyword(s):
Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gasterosteus aculeatus; Laboratory experiment; Nekton; North Pacific; Other studied parameter or process; Pelagos; Single species; Temperate
Related to:
Soor, Deep; Tigert, Liam R; Khodikian, Elissa; Bozai, Arsheen; Yoon, Gwangseok R; Porteus, Cosima S (2024): Changes in gill neuroepithelial cells and morphology of threespine stickleback (Gasterosteus aculeatus) to hypoxia and simulated ocean acidification. Journal of Comparative Physiology B-Biochemical Systemic and Environmentalphysiology, 194(5), 765-777, https://doi.org/10.1007/s00360-024-01575-z
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 48.813611 * Longitude: -125.156944
Event(s):
Bamfield_Inlet * Latitude: 48.813611 * Longitude: -125.156944
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typePorteus, Cosima S
2Species, unique identificationSpecies UIDPorteus, Cosima S
3Year of experimentYear expPorteus, Cosima S
4TreatmentTreatPorteus, Cosima SOxygen
5TreatmentTreatPorteus, Cosima SCO2
6Oxygen, partial pressurepO2kPaPorteus, Cosima S
7Temperature, waterTemp°CPorteus, Cosima S
8SalinitySalPorteus, Cosima S
9Number of cellsNo cells#Porteus, Cosima Sper mm of filament
10Number of cellsNo cells#Porteus, Cosima Sper mm of lamellae
11Surface areaSAµm2Porteus, Cosima Sin the filament
12Surface areaSAµm2Porteus, Cosima Sin the lamellae
13LengthlmmPorteus, Cosima SLamellae
14WidthwmmPorteus, Cosima SLamellae
15AreaAreaµm2Porteus, Cosima Sintralamellar mass
16Treatment: partial pressure of carbon dioxideT:pCO2µatmPorteus, Cosima S
17pH, NBS scalepH NBSPorteus, Cosima SNBS scale
18Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmPorteus, Cosima SCalculated using CO2SYS
19Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmPorteus, Cosima SCalculated using CO2SYS
20Bicarbonate ion[HCO3]-µmol/kgPorteus, Cosima SCalculated using CO2SYS
21Carbonate ion[CO3]2-µmol/kgPorteus, Cosima SCalculated using CO2SYS
22Carbon, inorganic, dissolvedDICµmol/kgPorteus, Cosima S
23Alkalinity, totalATµmol/kgPorteus, Cosima SCalculated using CO2SYS
24Aragonite saturation stateOmega ArgPorteus, Cosima SCalculated using CO2SYS
25Calcite saturation stateOmega CalPorteus, Cosima SCalculated using CO2SYS
26Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
28Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
1743 data points

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