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Sourisse, Jade M; Schunter, Celia (2024): Seawater carbonate chemistry and neuromolecular mechanisms related to reflex behaviour in Aplysia [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969458 (DOI registration in progress)

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Abstract:
Using a simple model, we exposed Aplysia to ambient or elevated CO2 conditions (approx. 1500 μatm) and tested how OA affected the neuromolecular response of the pleural–pedal ganglia and caused tail withdrawal reflex (TWR) impairment.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-03.
Keyword(s):
Animalia; Aplysia californica; Behaviour; Benthic animals; Benthos; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Laboratory experiment; Laboratory strains; Mollusca; Not applicable; Other studied parameter or process; Single species
Related to:
Sourisse, Jade M; Schunter, Celia (2024): Neuromolecular mechanisms related to reflex behaviour in Aplysia are affected by ocean acidification. Royal Society Open Science, 11(6), 240329, https://doi.org/10.1098/rsos.240329
Source:
Sourisse, Jade M; Schunter, Celia (2024): Supplementary material from "Neuromolecular mechanisms related to reflex behaviour in Aplysia are affected by ocean acidification". The Royal Society, https://doi.org/10.6084/M9.FIGSHARE.C.7262679.V1
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSchunter, Celia
2Species, unique identificationSpecies UIDSchunter, Celia
3Species, unique identification (URI)Species UID (URI)Schunter, Celia
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Schunter, Celia
5Video identificationVideo IDSchunter, CeliaOriginal video name
6Video identificationVideo IDSchunter, CeliaBlinding video name
7Individual codeIndividual codeSchunter, Celia
8ExperimentExpSchunter, CeliaTraining
9IdentificationIDSchunter, CeliaPoke
10Treatment: partial pressure of carbon dioxideT:pCO2µatmSchunter, Celia
11TreatmentTreatSchunter, Celiaexposed to gabazine or not
12DurationDurationsSchunter, Celiatail withdrawal reflex
13CommentCommentSchunter, CeliaBehav. Notes
14DurationDurationsSchunter, Celiatail withdrawal reflex, mean
15CommentCommentSchunter, CeliaRNA sample?
16IdentificationIDSchunter, Celia
17ReadsReads#Schunter, CeliaRaw
18ReadsReads#Schunter, CeliaTrimmed
19PercentagePerc%Schunter, Celiamapping rate (%) per sample after using HiSat2
20Gene abundanceGA#Schunter, Celia
21SalinitySalSchunter, Celia
22Temperature, waterTemp°CSchunter, Celia
23pHpHSchunter, CeliaNBS scale
24Alkalinity, totalATµmol/kgSchunter, Celia
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSchunter, Celia
26Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
28Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
10164 data points

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