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Martins, Catarina P P; Ziegler, Maren; Schubert, Patrick; Wilke, Thomas; Wall, Marlene (2024): Seawater carbonate chemistry and oxygen and pH gradients in coral boundary layer [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969056 (DOI registration in progress)

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Abstract:
Here, we investigated these effects on the reef-building corals Acropora cytherea, Pocillopora verrucosa, and Porites cylindrica. We preconditioned corals to a control (pH 8.0) and OA (pH 7.8) treatment for four months and tested how low flow (2 cm s−1) and moderate flow (6 cm s−1) affected O2 and H+ CBL traits (thickness, surface concentrations, and flux) inside a unidirectional-flow chamber.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-17.
Keyword(s):
Acropora cytherea; Animalia; Benthic animals; Benthos; Cnidaria; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Laboratory strains; Not applicable; Other; Other metabolic rates; Pocillopora verrucosa; Porites cylindrica; Respiration; Single species
Related to:
Martins, Catarina P P; Ziegler, Maren; Schubert, Patrick; Wilke, Thomas; Wall, Marlene (2024): Effects of water flow and ocean acidification on oxygen and pH gradients in coral boundary layer. Scientific Reports, 14(1), 12757, https://doi.org/10.1038/s41598-024-63210-9
Source:
Martins, Catarina P P (2024): Data for: Effects of water flow and ocean acidification on oxygen and pH gradients in coral boundary layer. figshare, https://doi.org/10.6084/M9.FIGSHARE.24534343
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeMartins, Catarina P P
2IdentificationIDMartins, Catarina P P
3Species, unique identificationSpecies UIDMartins, Catarina P P
4Species, unique identification (URI)Species UID (URI)Martins, Catarina P P
5Species, unique identification (Semantic URI)Species UID (Semantic URI)Martins, Catarina P P
6Colony number/IDColony no/IDMartins, Catarina P P
7IdentificationIDMartins, Catarina P Ptank
8TreatmentTreatMartins, Catarina P P
9TreatmentTreatMartins, Catarina P Pflow
10Light modeL modeMartins, Catarina P P
11Concentration boundary layer, thicknessCBL thickmmMartins, Catarina P PO2
12Concentration boundary layer, thicknessCBL thickmmMartins, Catarina P PH+
13OxygenO2µmol/lMartins, Catarina P Pcoral surface
14OxygenO2µmol/lMartins, Catarina P Pbulk seawater
15Oxygen, changeΔ O2µmol/lMartins, Catarina P Pat the coral surface relative to bulk seawater
16pHpHMartins, Catarina P Ptotal scale, coral surface
17pHpHMartins, Catarina P Ptotal scale, bulk seawater
18pH changeD pHMartins, Catarina P Ptotal scale, at the coral surface relative to bulk seawater
19Oxygen, fluxO2 fluxmmol/m2/hMartins, Catarina P P
20SalinitySalMartins, Catarina P P
21Salinity, standard deviationSal std dev±Martins, Catarina P P
22Temperature, waterTemp°CMartins, Catarina P P
23Temperature, water, standard deviationTemp std dev±Martins, Catarina P P
24pHpHMartins, Catarina P Ptotal scale
25pH, standard deviationpH std dev±Martins, Catarina P Ptotal scale
26Alkalinity, totalATµmol/kgMartins, Catarina P P
27Alkalinity, total, standard deviationAT std dev±Martins, Catarina P P
28Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmMartins, Catarina P PCalculated using CO2SYS
29Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Martins, Catarina P PCalculated using CO2SYS
30Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmMartins, Catarina P PCalculated using CO2SYS
31Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Martins, Catarina P PCalculated using CO2SYS
32Carbon, inorganic, dissolvedDICµmol/kgMartins, Catarina P PCalculated using CO2SYS
33Carbon, inorganic, dissolved, standard deviationDIC std dev±Martins, Catarina P PCalculated using CO2SYS
34Carbon dioxideCO2µmol/kgMartins, Catarina P PCalculated using CO2SYS
35Carbon dioxide, standard deviationCO2 std dev±Martins, Catarina P PCalculated using CO2SYS
36Bicarbonate ion[HCO3]-µmol/kgMartins, Catarina P PCalculated using CO2SYS
37Bicarbonate ion, standard deviation[HCO3]- std dev±Martins, Catarina P PCalculated using CO2SYS
38Carbonate ion[CO3]2-µmol/kgMartins, Catarina P PCalculated using CO2SYS
39Carbonate ion, standard deviation[CO3]2- std dev±Martins, Catarina P PCalculated using CO2SYS
40Aragonite saturation stateOmega ArgMartins, Catarina P PCalculated using CO2SYS
41Aragonite saturation state, standard deviationOmega Arg std dev±Martins, Catarina P PCalculated using CO2SYS
42Calcite saturation stateOmega CalMartins, Catarina P PCalculated using CO2SYS
43Calcite saturation state, standard deviationOmega Cal std dev±Martins, Catarina P PCalculated using CO2SYS
44OxygenO2µmol/lMartins, Catarina P P
45Oxygen, standard deviationO2 std dev±Martins, Catarina P P
46Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
10820 data points

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