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Ninokawa, Aaron; Saley, Alisha M; Shalchi, Roya; Gaylord, B (2024): Seawater carbonate chemistry and shell formation in adult marine mussels, Mytilus californianus [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.968916 (DOI registration in progress)

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Abstract:
Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hypothesized to drive calcification. Here, we experimentally decouple these drivers in an exploration of shell formation in adult marine mussels, Mytilus californianus.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from BCO-DMO (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-07.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mollusca; Mytilus californianus; North Pacific; Single species; Temperate
Related to:
Ninokawa, Aaron; Saley, Alisha M; Shalchi, Roya; Gaylord, B (2024): Multiple carbonate system parameters independently govern shell formation in a marine mussel. Communications Earth & Environment, 5(1), 273, https://doi.org/10.1038/s43247-024-01440-5
Source:
Gaylord, B (2024): Allometric scaling of calcification data for Mytilus californianus from 2021-2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925689
Gaylord, B (2024): Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925714
Gaylord, B (2024): Incubation data for Mytilus californianus calcification from January to April 2022 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925598
Gaylord, B (2024): Shell dissolution data for Mytilus californianus from March to July 2020 (OA decoupling project). (Version 1) Version Date 2024-05-06. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://www.bco-dmo.org/dataset/925664
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 38.371400 * Longitude: -123.076000
Date/Time Start: 2020-01-01T00:00:00 * Date/Time End: 2022-04-30T00:00:00
Event(s):
Carmet_Beach * Latitude: 38.371400 * Longitude: -123.076000 * Date/Time Start: 2020-01-01T00:00:00 * Date/Time End: 2022-04-30T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeNinokawa, Aaron
2Species, unique identificationSpecies UIDNinokawa, Aaron
3Species, unique identification (Semantic URI)Species UID (Semantic URI)Ninokawa, Aaron
4Species, unique identification (URI)Species UID (URI)Ninokawa, Aaron
5ExperimentExpNinokawa, Aaron
6IdentificationIDNinokawa, Aaronmodule
7Date/Time localDate/Time localNinokawa, Aaron
8Date/Time localDate/Time localNinokawa, AaronPacific Standard Time
9Local TimeLocal timeNinokawa, Aaronstart, Pacific Standard Time
10Date/Time localDate/Time localNinokawa, Aaronstart, Pacific Standard Time
11Date/time startDate/time startNinokawa, AaronUTC
12Incubation durationInc durhNinokawa, Aaron
13SalinitySalNinokawa, Aaron
14Temperature, waterTemp°CNinokawa, Aaron
15Calcification rate of calcium carbonateCalc rate CaCO3µmol/g/hNinokawa, Aaronper g^0.72
16Tissue, massTis massgNinokawa, AaronDried mussel
17Shell, massShell mgNinokawa, AaronDried mussel
18Wet massWet mgNinokawa, Aaronprior to incubation
19Alkalinity, totalATµmol/kgNinokawa, Aaron
20pHpHNinokawa, Aarontotal scale
21Bicarbonate ion[HCO3]-µmol/kgNinokawa, Aaron
22Carbonate ion[CO3]2-µmol/kgNinokawa, Aaron
23Aragonite saturation stateOmega ArgNinokawa, Aaroncorrected for calcium concentration where calcium was modified
24Calcite saturation stateOmega CalNinokawa, Aaroncorrected for calcium concentration where calcium was modified
25CalciumCammol/gNinokawa, Aaroneither calculated from salinity or measured with Ca ion selective electrode
26pHpHNinokawa, Aaronfree scale
27RatioRatioNinokawa, AaronMean substrate to inhibitor ratio, [HCO3-] [H+] during incubation
28Carbon dioxideCO2µmol/kgNinokawa, Aaron
29Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNinokawa, Aaron
30Carbon, inorganic, dissolvedDICµmol/kgNinokawa, Aaron
31OxygenO2µmol/kgNinokawa, Aarondissolved
32Condition indexCINinokawa, Aarondry tissue mass divided by total dry mass
33MassMasskgNinokawa, Aaronseawater in incubation vessel
34Byssal thread, production rateByssal thread prod#/hNinokawa, Aaron
35Change in alkalinity, totalTA chnµmol/kgNinokawa, Aaron
36Change in ammonia concentrationNH3 chnµmol/kgNinokawa, Aaron
37CorrectioncorrNinokawa, Aaronfor alkalinity change due to abiotic dissolution calculated based on shell mass and seawater saturation state
38Dissolution rateDiss rateµmol/h/gNinokawa, Aaron
39Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
18307 data points

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