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Chen, Haijin; Feng, Yaoyi; Cui, Jinghui; Wang, Xiaojie (2024): Seawater carbonate chemistry and the response of brain and gill CRH systems of marine medaka to ocean acidification [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.968787 (DOI registration in progress)

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Abstract:
In this study, marine medaka were exposed to CO2-acidified seawater (440 ppm, 1000 ppm, and 1800 ppm CO2) for 2 h, 4 h, 24 h, and 7 d, respectively. To elucidate the response of the CRH system to ocean acidification, the location and relative quantification of Crh in the brain and gills after acute (2 h, 4 h, and 24 h) and short-term (7 d) exposure to acidification, as well as the relative quantification of genes associated with the CRH system, were investigated.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-05.
Keyword(s):
Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Gene expression (incl. proteomics); Laboratory experiment; Laboratory strains; Nekton; Not applicable; Oryzias melastigma; Pelagos; Single species
Related to:
Chen, Haijin; Feng, Yaoyi; Cui, Jinghui; Wang, Xiaojie (2024): Response of CRH system in brain and gill of marine medaka to seawater acidification. Fish Physiology and Biochemistry, https://doi.org/10.1007/s10695-024-01332-7
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeWang, Xiaojie
2Species, unique identificationSpecies UIDWang, Xiaojie
3TreatmentTreatWang, Xiaojie
4Time in hoursTimehWang, Xiaojie
5Gene nameGeneWang, Xiaojie
6Gene expressionGene expressionWang, Xiaojiein gill of medaka
7Gene expressionGene expressionWang, Xiaojiein brain of medaka
8Cell numberCell noWang, XiaojieCrh positive cells number in the medaka gills
9Cell numberCell noWang, XiaojieCrh positive cells number in anterior hypothalamus of medaka
10Cell numberCell noWang, XiaojieCrh positive cells number in middle hypothalamus of medaka
11RatioRatioWang, XiaojieCrh/GAPDH
12pHpHWang, XiaojieNBS scale
13pH, standard errorpH std e±Wang, XiaojieNBS scale
14Alkalinity, totalATµmol/kgWang, Xiaojie
15Alkalinity, total, standard errorAT std e±Wang, Xiaojie
16Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmWang, Xiaojie
17Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Wang, Xiaojie
18SalinitySalWang, Xiaojie
19Salinity, standard errorSal std e±Wang, Xiaojie
20Temperature, waterTemp°CWang, Xiaojie
21Temperature, water, standard errorT std e±Wang, Xiaojie
22Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
24Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
9060 data points

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