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Deans, Fenella; Décima, Moira: Bacterioplankton abundance and heterotrophic production from the Chatham Rise, east of New Zealand, measured during the SalpPOOP (TAN1810) campaign onboard the RV Tangaroa [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.967249 (dataset in review)

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Abstract:
Heterotrophic bacterioplankton abundance and production was sampled from six to eight depths in the euphotic zone on the SalpPOOp voyage off the east coast of New Zealand in October/November 2018. Duplicate 1.5 ml samples were collected for cell abundance measurements. Samples were preserved with 15 µl of 25% Glutaraldehyde for assessing pico- and nano-phytoeukaryote and heterotrophic bacterioplankton abundances. Samples were kept in the dark for 15 minutes at lab temperature (>8 °C) before being flash-freezing in liquid nitrogen and stored at -80°C. Samples were subsequently analysed on a Beckman-Coulter CytoFLEX S flow cytometer. Bacterioplankton heterotrophic production was estimated from the incorporation of tritiated leucine using the centrifugation method (Smith and Azam, 1992). Triplicate subsamples and one control of 1.2ml seawater were added to labelled microcentrifuge tubes, with 120 µl of 50% trichloroacetic acid (TCA) added to the controls. The samples and control tubes all received an addition of 40 nM of 3H-Leucine (Perkin-Elmer, specific activity = 150.1 Ci mmol−1), and were then incubated for two hours in the dark in on-deck incubators at in-situ temperature for 20 m depth at that station. The incubations were ended by the addition of 120 µl of 50% TCA to fix the sample, with the samples then stored at -20ºC before processing on land following the procedure outlined in Gasol (1999). All microcentrifuge tubes were vortexed before being spun on a centrifuge for 10 minutes at 12000 g followed by aspiration of the liquid from the sample. The microcentrifuge tubes then had 1 ml of 5% TCA added, before being vortexed and spun for another 10 minutes at 12000 g. The tubes were aspirated for a final time before the addition of 1 ml of scintillation cocktail and a final vortex. From this point the samples were stored in the dark at room temperature. The incorporated radioactivity of each sample was determined by running the tubes on a Tri-Carb® Liquid Scintillation Counter (Perkin-Elmer) with quenching correction. The resulting scintillation values were used to calculate the incorporated Leucine, and from this the bacterial uptake of carbon (Gasol, 1999).
Keyword(s):
bacterial production; bacterioplankton; SalpPOOP; salps
Supplement to:
Deans, Fenella; Décima, Moira; Gutiérrez-Rodríguez, Andrés; Morales, Sergio E; Baltar, Federico; Law, Cliff S (in prep.): Influence of salp blooms on bacterioplankton production, diversity, and community composition in the Southern Ocean.
Source:
Décima, Moira; Gutiérrez-Rodríguez, Andrés; Selph, Karen E; Safi, Karl; Kelly, Thomas B; Latasa, Mikel; Gorbunov, Maxim Y (2021): Phytoplankton net primary production (NPP) and size-fractionated chlorophyll at Chatham Rise, east of New Zealand, measured during the SalpPOOP (TAN1810) campaign onboard the RV Tangaroa [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.928088
Décima, Moira; Gutiérrez-Rodríguez, Andrés; Selph, Karen E; Safi, Karl; Kelly, Thomas B; Latasa, Mikel; Gorbunov, Maxim Y (2021): Salp abundance and size-structure at Chatham Rise, east of New Zealand, measured during the SalpPOOP (TAN1810) campaign onboard the RV Tangaroa [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.928092
References:
Gasol, J (1999): How to measure bacterial activity and production with the uptake of radiolabeled leucine. The Leucine Handbook, pp. 1-32
Smith, David Charles; Azam, Farooq (1992): A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine. Marine Microbial Food Webs, 6(2), 107-114
Project(s):
Salp Particle expOrt and Ocean Production (SalpPOOP)
Funding:
Ministry for Business Innovation and Employment, grant/award no. COES- COES1901: NIWA core programme Coast and Oceans Food Webs
Ministry for Business Innovation and Employment, grant/award no. COOF-COOF1902: NIWA core programme Ocean Flows
Coverage:
Median Latitude: -44.240275 * Median Longitude: 177.520290 * South-bound Latitude: -45.556000 * West-bound Longitude: 174.095000 * North-bound Latitude: -42.662000 * East-bound Longitude: -179.884000
Date/Time Start: 2018-10-25T13:13:00 * Date/Time End: 2018-11-16T22:41:00
Minimum DEPTH, water: m * Maximum DEPTH, water: 150 m
Event(s):
TAN1810_1_015 (TAN1810_015) * Latitude: -44.600000 * Longitude: 174.220000 * Date/Time: 2018-10-25T13:13:00 * Location: Chatham Rise, east of New Zealand * Campaign: TAN1810 (Salp Particle expOrt and Ocean Production (SalpPOOP)) * Basis: Tangaroa * Method/Device: CTD
TAN1810_1_024 (TAN1810_024) * Latitude: -44.530000 * Longitude: 174.230000 * Date/Time: 2018-10-26T13:11:00 * Location: Chatham Rise, east of New Zealand * Campaign: TAN1810 (Salp Particle expOrt and Ocean Production (SalpPOOP)) * Basis: Tangaroa * Method/Device: CTD
TAN1810_1_039 (TAN1810_039) * Latitude: -44.510000 * Longitude: 174.120000 * Date/Time: 2018-10-27T13:07:00 * Location: Chatham Rise, east of New Zealand * Campaign: TAN1810 (Salp Particle expOrt and Ocean Production (SalpPOOP)) * Basis: Tangaroa * Method/Device: CTD
Comment:
The cycles refer to a parcel of water that was followed for a number of days using a Lagrangian technique following a drifter array. Each parcel of water or 'cycle' contained a salp bloom or was a control site. As the same parcel of water was followed in each cycle, changes in the bacteria around the salp bloom (or control site) could be sampled.
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This study was also funded by the Royal Society of New Zealand Marsden Fast-track award to Moira Décima, and a University of Otago PhD Scholarship to Fenella Deans.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEventDeans, Fenella
2Device typeDeviceDeans, Fenella
3DATE/TIMEDate/TimeDeans, FenellaGeocode – UTC
4LATITUDELatitudeDeans, FenellaGeocode – Start
5LONGITUDELongitudeDeans, FenellaGeocode – Start
6Cruise/expeditionExpeditionDeans, Fenella
7DEPTH, waterDepth watermDeans, FenellaGeocode
8Water massWater massDeans, Fenellasubantarctic (SA), subtropical (ST) and Southland Current modified subantarctic (SC-SA)
9Salpidae, bloom, presenceSalp bloom presDeans, Fenella
10CycleCyDeans, Fenella
11Cycle descriptionCycle descrDeans, FenellaCycle word
12Day of cycleDay of cycledayDeans, Fenella
13Cast numberCastDeans, FenellaCTD
14Station labelStationDeans, Fenella
15Temperature, waterTemp°CDeans, FenellaCTD, Sea-Bird SBE 911plus
16SalinitySalDeans, FenellaCTD, Sea-Bird SBE 911plusppt
17Bottle numberBottleDeans, FenellaNiskin bottle
18Pressure, waterPressdbarDeans, FenellaCTD, Sea-Bird SBE 911plus
19OxygenO2µmol/kgDeans, FenellaCTD, Sea-Bird SBE 911plus
20FluorescenceFluorescencemg/m3Deans, FenellaCTD, Sea-Bird SBE 911plus
21Chlorophyll totalChl totmg/m3Deans, FenellaFluorometer, Turner Designs, 10-AUSum of size fractioned chlorophyll (Data from Décima et al., 2021, https://doi.org/10.1594/PANGAEA.928088)
22Bacterial production as carbonBP Cµg/l/dayDeans, FenellaTritated leucine incorporation method according to Smith and Azam (1992)
23BacteriaBact#/mlDeans, FenellaFlow cytometer, Beckman Coulter, CytoFLEX S (N-V-B-R)Abundance in number of cells per ml
24Salpidae, oozooid, biomass as carbonSalpidae oozooid Cg/m2Deans, Fenellamean
25Salpidae, blastozooid, biomass as carbonSalpidae blastozooid Cg/m2Deans, Fenellamean
26Salpa thompsoni, biomass as carbonS. thompsoni Cg/m2Deans, Fenellamean
27Salpidae, other, biomass as carbonSalpidae other Cg/m2Deans, Fenellamean
28Salpidae, total biomass as carbonSalpidae total Cg/m2Deans, Fenellamean
29Salpidae, oozooid, biomass as carbon, dailySalpidae oozooid C dailyg/m2Deans, Fenella
30Salpidae, blastozooid, biomass as carbon, dailySalpidae blastozooid C dailyg/m2Deans, Fenella
31Salpa thompsoni, biomass as carbon, dailyS. thompsoni C dailyg/m2Deans, Fenella
32Salpidae, other, biomass as carbon, dailySalpidae other C dailyg/m2Deans, Fenella
33Salpidae, total biomass as carbon, dailySalpidae total C dailyg/m2Deans, Fenella
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3559 data points

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