O'Brien, Phoebe Alexandra Joy; Barrenechea Angeles, Ines; Cermakova, Kristina; Jarrossay, Renaud; Polovodova Asteman, Irina (2025): Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.965589, In: O'Brien, PAJ et al. (2025): Foraminiferal and environmental variable data of Idefjorden (2020) sediment surface samples from stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.965583
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Published: 2025-02-13 • DOI registered: 2025-03-14
Abstract:
The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland.
Supplement to:
O'Brien, Phoebe Alexandra Joy; Barrenechea Angeles, Ines; Cermakova, Kristina; Pawlowski, Jan; Alve, Elisabeth; Nordberg, Kjell; Polovodova Asteman, Irina (2024): Assessing Environmental Quality in a Historically Polluted Fjord: A Comparison of Benthic Foraminiferal eDNA and Morphospecies Approaches. Journal of Geophysical Research: Biogeosciences, 129(12), e2023JG007781, https://doi.org/10.1029/2023JG007781
Coverage:
Median Latitude: 59.090778 * Median Longitude: 11.317667 * South-bound Latitude: 59.051000 * West-bound Longitude: 11.212167 * North-bound Latitude: 59.113666 * East-bound Longitude: 11.406167
Date/Time Start: 2020-11-10T00:00:00 * Date/Time End: 2020-11-11T00:00:00
Minimum Elevation: -69.0 m * Maximum Elevation: -26.0 m
Event(s):
IF20-01D * Latitude: 59.090000 * Longitude: 11.376667 * Date/Time: 2020-11-10T00:00:00 * Elevation: -38.0 m * Location: Idefjorden, Sweden * Method/Device: Gemini Corer * Comment: metagenome, marine sediment
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Text file | TEXT | O'Brien, Phoebe Alexandra Joy | |||
| 2 | Text file (Media Type) | TEXT (Type) | O'Brien, Phoebe Alexandra Joy | |||
| 3 | Text file (File Size) | TEXT (Size) | Bytes | O'Brien, Phoebe Alexandra Joy | ||
| 4 | File content | Content | O'Brien, Phoebe Alexandra Joy | Metabarcoding |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2 data points