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Data Publisher for Earth & Environmental Science

O'Brien, Phoebe Alexandra Joy; Barrenechea Angeles, Ines; Cermakova, Kristina; Jarrossay, Renaud; Polovodova Asteman, Irina: Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.965589 (dataset in review), In: O'Brien, PAJ et al.: Foraminiferal and environmental variable data of Idefjorden (2020) sediment surface samples from stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04 [dataset bundled publication]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.965583 (dataset in review)

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Abstract:
The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland.
Keyword(s):
eDNA metabarcoding; Foraminiferal assemblages; heavy metals; Pollutants
Coverage:
Median Latitude: 59.090778 * Median Longitude: 11.317667 * South-bound Latitude: 59.051000 * West-bound Longitude: 11.212167 * North-bound Latitude: 59.113666 * East-bound Longitude: 11.406167
Date/Time Start: 2020-11-10T00:00:00 * Date/Time End: 2020-11-11T00:00:00
Minimum Elevation: -69.0 m * Maximum Elevation: -26.0 m
Event(s):
IF20-01D * Latitude: 59.090000 * Longitude: 11.376667 * Date/Time: 2020-11-10T00:00:00 * Elevation: -38.0 m * Location: Idefjorden, Sweden * Method/Device: Gemini Corer * Comment: metagenome, marine sediment
IF20-01E * Latitude: 59.090000 * Longitude: 11.376667 * Date/Time: 2020-11-10T00:00:00 * Elevation: -38.0 m * Location: Idefjorden, Sweden * Method/Device: Gemini Corer * Comment: Foraminifera count; metagenome, marine sediment (replicate 2)
IF20-01F * Latitude: 59.090000 * Longitude: 11.376667 * Date/Time: 2020-11-10T00:00:00 * Elevation: -38.0 m * Location: Idefjorden, Sweden * Method/Device: Gemini Corer * Comment: Foraminifera count; metagenome, marine sediment (replicate 3)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Text fileTEXTO'Brien, Phoebe Alexandra Joy
2Text file (Media Type)TEXT (Type)O'Brien, Phoebe Alexandra Joy
3Text file (File Size)TEXT (Size)BytesO'Brien, Phoebe Alexandra Joy
4File contentContentO'Brien, Phoebe Alexandra JoyMetabarcoding
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2 data points

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