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Yanuka-Golub, Keren; Belkin, Natalia; Weber, Nurit; Mayyani, Meor; Levy, Yehuda; Reznik, Itay J; Rubin-Blum, Maxim; Rahav, Eyal; Kiro, Yael (2024): Investigating the contribution of SGD to the coastal microbial community with bottle incubation experiments [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.962219, In: Yanuka-Golub, K et al. (2024): Groundwater microorganisms affect coastal seawater microbial abundance, activity and diversity [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.962218

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Abstract:
We investigated seawater microbial abundance, activity and diversity throughthree laboratory-controlled bottle incubations mimicking different mixing scenarios between SGD (either ambient or filtered through 0.1 µm/0.22 µm) and seawater to determine the contribution of SGD to the coastal microbial community. The experiments were conducted with five different treatments (including ambient seawater not exposed to SGD) in triplicates. The first experiment (Exp. 1) was designed to test the relative contribution of brackish discharged groundwater (salinity = 7.9 ppt vs. the ambient salinity of the SEMS of ~39.5 ppt) on the microbial productivity and abundance of reference coastal seawater by mixing different ratios (1, 5, 10 and 20% v:v) of discharged groundwater. Discharged groundwater was collected into acid-cleaned containers on the day the experiment was initiated near Achziv Nature Reserve (33° 3′52 N, 35° 6′14.94 E). The second and third experiments (Exp. 2; Exp.3) were designed to extend Exp. 1 and aimed to specifically investigate how groundwater-derived microorganisms affect the activity and abundance of marine organisms once discharged into the sea. For these experiments, fresh groundwater (FGW) was collected from drilling wells and pumped into 20 L acid-cleaned sample-rinsed carboys the same day the experiment was initiated. At the laboratory, fresh groundwater was either filtered through a 0.1 μm polycarbonate filter (Exp. 2) or serially filtered through 0.22 and 0.1 μm polycarbonate filter (Exp. 3) and the filtrate was added to seawater in different mixing scenarios. Ambient coastal seawater was collected by pumping at the Israel Oceanographic and Limnological Research Institute (IOLR) into acid-cleaned carboys, and mixed with either brackish groundwater (Exp.1) or fresh groundwater (Exp. 2, Exp. 3) at the desired ratios and filtration size. The duration of the experiments was 3-5 days, and samples were taken for the following analyses: chlorophyll a (Exp. 1 & 2, every 24Hr.), dissolved nutrient concentrations (Exp. 2 & 3 T zero and T final), flow cytometry (bacterial and phytoplankton abundance, every 24Hr.), primary and heterotrophic production rates (Exp. 1 & 2, every 24Hr.; Exp. 3 T zero and T final). Currently, little is known about the interactions between groundwater-borne and coastal seawater microbial populations, and groundwater microbes' role upon introduction to coastal seawater populations. Here, we investigated seawater microbial abundance, activity and diversity through laboratory-controlled bottle incubations mimicking different mixing scenarios between SGD (either ambient or filtered through 0.1 µm/0.22 µm) and seawater.
Keyword(s):
autotrophic organisms; coastal ecosystem; experiment; Heterotrophic prokaryotes; microbial community; Submarine groundwater discharge; subterranean estuary
Related to:
Rahav, Eyal; Raveh, Ofrat; Yanuka-Golub, Keren; Belkin, Natalia; Astrahan, Peleg; Maayani, Meor; Tsumi, Noam; Kiro, Yael; Herut, Barak; Silverman, Jacob; Angel, Dror L (2020): Nitrate-Enrichment Structures Phytoplankton Communities in the Shallow Eastern Mediterranean Coastal Waters. Frontiers in Marine Science, 7, 611497, https://doi.org/10.3389/fmars.2020.611497
Coverage:
Latitude: 32.826111 * Longitude: 34.955556
Date/Time Start: 2020-06-17T00:00:00 * Date/Time End: 2021-06-24T00:00:00
Event(s):
SGD_Experiment_1  * Latitude: 32.826111 * Longitude: 34.955556 * Date/Time Start: 2020-06-17T00:00:00 * Date/Time End: 2020-06-21T00:00:00 * Method/Device: Portable peristaltic pump, Cole-Parmer, Masterflex * Comment: brackish discharged groundwater (salinity = 7.9 ppt)
SGD_Experiment_2  * Latitude: 32.826111 * Longitude: 34.955556 * Date/Time Start: 2020-11-03T00:00:00 * Date/Time End: 2020-11-08T00:00:00 * Method/Device: Portable peristaltic pump, Cole-Parmer, Masterflex * Comment: Fresh groundwater (FGW) collected from inland drilling wells.
SGD_Experiment_3  * Latitude: 32.826111 * Longitude: 34.955556 * Date/Time Start: 2021-06-21T00:00:00 * Date/Time End: 2021-06-24T00:00:00 * Method/Device: Portable peristaltic pump, Cole-Parmer, Masterflex * Comment: Fresh groundwater (FGW) collected from inland drilling wells.
Comment:
This work was partly supported by:
The Israeli National Monitoring Program and by the Ministry of Energy (grant number 3-11519). Sustainability and Energy Research Initiative (SAERI) grant. Helen Kimmel Center for Planetary Science grant. De Botton center for Marine Sciences grant. This study was supported by the, Zuckerman Faculty Scholars program, a research grant from the Center for Scientific Excellence, a research grant from the Raymond Lapon Fund, and the Estate of David Levinson, a research grant from Paul and Tina Gardner, and a research grant from the Center for New Scientists at the Weizmann Institute of Science.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventRahav, Eyal
DateDateRahav, Eyal
LATITUDELatitudeRahav, EyalGeocode
LONGITUDELongitudeRahav, EyalGeocode
TreatmentTreatRahav, Eyal
Chlorophyll aChl aµg/l
Primary production of carbonPP Cµg/l/dayRahav, EyalLiquid scintillation counter, Packard, TRI-CARB 2100 TR
ProkaryotesProkaryotes#/mlRahav, EyalAcoustic Focusing Flow Cytometer, Applied Biosystems, Attune; equipped with a syringe based fluidic system and 488 and 405 nm lasers
Prokaryotes, production as carbonProk prod Cµg/l/dayRahav, EyalLiquid scintillation counter, Packard, TRI-CARB 2100 TR
10 SynechococcusSynechococcus#/mlRahav, EyalAcoustic Focusing Flow Cytometer, Applied Biosystems, Attune; equipped with a syringe based fluidic system and 488 and 405 nm lasers
11 ProchlorococcusProchlorococcus#/mlRahav, EyalAcoustic Focusing Flow Cytometer, Applied Biosystems, Attune; equipped with a syringe based fluidic system and 488 and 405 nm lasers
12 SilicateSi(OH)4µmol/lFlow injection analyzer, Lachat Instruments, QuikChem 8000
13 Phosphate[PO4]3-µmol/lFlow injection analyzer, Lachat Instruments, QuikChem 8000
14 Nitrate[NO3]-µmol/lFlow injection analyzer, Lachat Instruments, QuikChem 8000
15 AmmoniaNH3µmol/lFlow injection analyzer, Lachat Instruments, QuikChem 8000
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1382 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Date

Latitude

Longitude

Treat

Chl a [µg/l]

PP C [µg/l/day]

Prokaryotes [#/ml]

Prok prod C [µg/l/day]
10 
Synechococcus [#/ml]
11 
Prochlorococcus [#/ml]
12 
Si(OH)4 [µmol/l]
13 
[PO4]3- [µmol/l]
14 
[NO3]- [µmol/l]
15 
NH3 [µmol/l]
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SGD_Experiment_22020-11-0832.82611134.9555565%1.0117.425441160188.92999977.51251558724627.750007712.250000.64500-0.044100000.8700000.108
SGD_Experiment_22020-11-0832.82611134.9555565%1.4128.807562140174.66750007.73466883238860.500006851.25000-0.63500-0.051450000.6400001.142
SGD_Experiment_22020-11-0832.82611134.95555620%2.6945.025784620357.60000008.65892544659394.0000014028.00000-8.52000-0.08760000-2.2300000.153
SGD_Experiment_22020-11-0832.82611134.95555620%2.0035.854518350204.57999965.01984372145738.000008472.00000-14.45000-0.074400002.130000-0.106
SGD_Experiment_22020-11-0832.82611134.95555620%2.2729.771362960255.75999968.76871546726400.0000011280.00000-14.00000-0.09000000-21.7000000.283
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SGD_Experiment_22020-11-0832.82611134.9555565% filter0.249.563449297533.505000015.990363740121579.500003722.25000-1.21000-0.04305000-3.080000-0.200
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SGD_Experiment_22020-11-0832.82611134.955556Control GW0.000.00000000087.16666701.470855890715.00000460.000005.580000.02500000-1.2200000.126
SGD_Experiment_22020-11-0832.82611134.955556Control GW0.000.00000000090.28333302.200883284170.00000450.000005.48000-0.006000000.5500000.336
SGD_Experiment_3 2021-06-2132.82611134.955556Control SW5.377001779138720.00000004.6460620714363.33300586.66700
SGD_Experiment_32021-06-2132.82611134.955556Control SW5.749555160324013.33300003.7120844655513.33300663.33300
SGD_Experiment_32021-06-2132.82611134.955556Control SW5.482651246355600.00000003.1030929444430.000002110.00000
SGD_Experiment_32021-06-2132.82611134.9555565%6.696786032573300.00000004.1948937058581.99965784.00035
SGD_Experiment_32021-06-2132.82611134.9555565%8.150578292540330.00000005.3797110114378.500001270.50000
SGD_Experiment_32021-06-2132.82611134.9555565%4.881005338431718.00000005.5228097223783.499651252.99965
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.22 µm6.562500000411613.99970004.1238446946310.500001288.00035
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.22 µm7.362377669430612.00040004.5241208115484.499651162.00035
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.22 µm6.988712189414610.00040004.5761567067363.99965724.50000
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.1 µm5.523242883490588.00040004.9904424875540.500351120.00035
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.1 µm5.254670819699454.00040005.2956530267560.00000577.50000
SGD_Experiment_32021-06-2132.82611134.9555565% filter 0.1 µm5.207962633465976.00040004.0457908514242.000003682.00035
SGD_Experiment_32021-06-2132.82611134.955556SW + DDW 5%6.813556495382507.99970006.3093522924612.999651319.50035
SGD_Experiment_32021-06-2132.82611134.955556SW + DDW 5%7.502502224435204.00000006.7256394545040.000001354.50000
SGD_Experiment_32021-06-2132.82611134.955556SW + DDW 5%6.994550712411880.00040005.6098697784984.000351315.99965
SGD_Experiment_32021-06-2132.82611134.955556SW (Achziv)40.56939502040.277307740
SGD_Experiment_32021-06-2132.82611134.955556SW (Achziv)33.79670819032.253677670
SGD_Experiment_32021-06-2132.82611134.955556SW (Achziv)29.89879893028.382435800
SGD_Experiment_32021-06-2332.82611134.955556Control SW475693.3330000105750.000001470.00000
SGD_Experiment_32021-06-2332.82611134.955556Control SW566440.0000000102800.000001216.66700
SGD_Experiment_32021-06-2332.82611134.955556Control SW808400.000000062996.667002970.00000
SGD_Experiment_32021-06-2332.82611134.9555565%875994.000000083422.500001473.49965
SGD_Experiment_32021-06-2332.82611134.9555565%845488.000400084013.999651315.99965
SGD_Experiment_32021-06-2332.82611134.9555565%729582.000000093946.999651200.49965
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.22 µm889195.9997000166099.500002782.50000
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.22 µm693952.0004000131638.500001263.49965
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.22 µm656809.9997000140700.000001399.99965
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.1 µm983304.000000086684.50035892.50000
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.1 µm1398754.000000080601.499651372.00035
SGD_Experiment_32021-06-2332.82611134.9555565% filter 0.1 µm1025514.000000047960.500354378.50000
SGD_Experiment_32021-06-2332.82611134.955556SW + DDW 5%636103.999700091168.000351281.00000
SGD_Experiment_32021-06-2332.82611134.955556SW + DDW 5%681253.999700092179.500001477.00035
SGD_Experiment_32021-06-2332.82611134.955556SW + DDW 5%638455.9997000111433.000401462.99965
SGD_Experiment_32021-06-2332.82611134.955556SW (Achziv)
SGD_Experiment_32021-06-2332.82611134.955556SW (Achziv)
SGD_Experiment_32021-06-2332.82611134.955556SW (Achziv)
SGD_Experiment_32021-06-2432.82611134.955556Control SW9.0050260612.1879854980.974000.107000000.160000
SGD_Experiment_32021-06-2432.82611134.955556Control SW12.7536299302.782681443-0.064000.03800000-0.820000
SGD_Experiment_32021-06-2432.82611134.955556Control SW6.48501489211.6640460500.036000.05100000-0.160000
SGD_Experiment_32021-06-2432.82611134.9555565%17.3786532004.1006286790.227850.04200000-1.386000
SGD_Experiment_32021-06-2432.82611134.9555565%19.6875000003.3681233850.10815-0.05460000-0.525000
SGD_Experiment_32021-06-2432.82611134.9555565%19.7314780302.7366878110.18795-0.092526630.768558
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.22 µm16.7409717103.244037789-0.01365-0.101704680.609000
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.22 µm17.9943456803.280062640-0.24150-0.09808029-0.609000
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.22 µm23.9240506301.693968527-0.39270-0.08193528-0.546000
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.1 µm10.4081347707.8282000180.01995-0.070464660.315000
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.1 µm15.23105920015.5845504700.45465-0.07573650-0.462000
SGD_Experiment_32021-06-2432.82611134.9555565% filter 0.1 µm14.5568415400.00420-0.09418794-0.252000
SGD_Experiment_32021-06-2432.82611134.955556SW + DDW 5%14.8719052503.2260253640.143850.004071060.315000
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SGD_Experiment_32021-06-2432.82611134.955556SW + DDW 5%15.9200484001.725990616-0.31710-0.017345790.693000
SGD_Experiment_32021-06-2432.82611134.955556SW (Achziv)43.6499441509.4749169020.022000.0700000063.040000
SGD_Experiment_32021-06-2432.82611134.955556SW (Achziv)44.38291139012.7285899100.502000.090000004.400000
SGD_Experiment_32021-06-2432.82611134.955556SW (Achziv)35.08469844014.8510063701.398000.145000004.700000