Stenvers, Vanessa; Hauss, Helena; Schmittmann, Lara; Bayer, Till; Havermans, Charlotte; Hentschel, Ute; Sweetman, Andrew K; Hoving, Henk-Jan T (2023): Microbial community composition associated with Periphylla periphylla exposed to sediment plumes and increasing temperatures [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.957395
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Abstract:
This dataset comprises the microbial community composition associated with the outer bell of the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Microbial community composition is given in raw counts for each amplicon sequence variant (ASV) encountered, based on 16S rRNA sequencing. Taxonomy for each ASV is listed, including Kingdom, Phylum, Class, Order, Family, Genus and Species, which were assigned using QIIME2 and the Silva 132 99% OTUs 16S rRNA database (Quast et al. 2013).
Supplement to:
Stenvers, Vanessa; Hauss, Helena; Bayer, Till; Havermans, Charlotte; Hentschel, Ute; Schmittmann, Lara; Sweetman, Andrew K; Hoving, Henk-Jan T (2023): Experimental mining plumes and ocean warming trigger stress in a deep pelagic jellyfish. Nature Communications, 14(1), 7352, https://doi.org/10.1038/s41467-023-43023-6
Related to:
Stenvers, Vanessa; Hauss, Helena; Schmittmann, Lara; Bayer, Till; Havermans, Charlotte; Hentschel, Ute; Sweetman, Andrew K; Hoving, Henk-Jan T (2023): Physiological and behavioural responses of the deep pelagic jellyfish Periphylla periphylla exposed to sediment plumes and increasing temperatures. PANGAEA, https://doi.org/10.1594/PANGAEA.957367
Stenvers, Vanessa; Hauss, Helena; Schmittmann, Lara; Bayer, Till; Havermans, Charlotte; Hentschel, Ute; Sweetman, Andrew K; Hoving, Henk-Jan T (2023): Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures. PANGAEA, https://doi.org/10.1594/PANGAEA.962217
References:
Quast, Christian; Pruesse, Elmar; Yilmaz, Pelin; Gerken, Jan; Schweer, Timmy; Yarza, Pablo; Peplies, J; Glöckner, Frank Oliver (2012): The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41(D1), D590-D596, https://doi.org/10.1093/nar/gks1219
Project(s):
Funding:
Horizon 2020 (H2020), grant/award no. 818123: Integrated Assessment of Atlantic Marine Ecosystems in Space and Time
Coverage:
Median Latitude: 56.347740 * Median Longitude: 0.211790 * South-bound Latitude: 47.250220 * West-bound Longitude: -10.104630 * North-bound Latitude: 61.100000 * East-bound Longitude: 5.585000
Date/Time Start: 2020-12-09T10:34:15 * Date/Time End: 2021-11-20T17:30:00
Minimum Elevation: -4427.2 m * Maximum Elevation: 0.0 m
Event(s):
Lurefjord_Norway_Periphylla_Sampling_1 * Latitude: 60.693000 * Longitude: 5.155000 * Date/Time Start: 2021-03-07T12:30:00 * Date/Time End: 2021-03-15T16:30:00 * Elevation Start: -470.0 m * Elevation End: 0.0 m * Location: Norwegian fjord
Comment:
FeatureID = Amplicon sequence variant (ASV) identifier
Confidence = Confidence of assigned taxonomic ID through QIIME2
TaxonPhylogeny = Summary taxon phylogeny
pp054 - S4 = Relative abundances for ASVs within each sample.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Binary Object | Binary | Stenvers, Vanessa | |||
| 2 | Binary Object (Media Type) | Binary (Type) | Stenvers, Vanessa | |||
| 3 | Binary Object (File Size) | Binary (Size) | Bytes | Stenvers, Vanessa | ||
| 4 | File content | Content | Stenvers, Vanessa |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC) * Processing Level: PANGAEA data processing level 3 (ProcLevel3)
Size:
2 data points