Citation:

PANGAEA.944854

Name: Seawater carbonate chemistry and photophysiology, growth, carbon production, and cellular pigment and trace metal quotas of the Antarctic phytoplankton Geminigera cryophila and Pseudo‐nitzschia subcurvata
Published: 2022-06-01
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Cryptophyta; Geminigera cryophila; Growth/Morphology; Inorganic toxins; Laboratory experiment; Laboratory strains; Not applicable; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Pseudo-nitzschia subcurvata; Single species

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Keyword(s):

Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Cryptophyta; Geminigera cryophila; Growth/Morphology; Inorganic toxins; Laboratory experiment; Laboratory strains; Not applicable; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Pseudo-nitzschia subcurvata; Single species

Supplement to:

Camoying, Marianne; Thoms, Silke; Geuer, Jana K; Koch, Boris P; Bischof, Kai; Trimborn, Scarlett (2022): In contrast to diatoms, cryptophytes are susceptible to iron limitation, but not to ocean acidification. Physiologia Plantarum, 174(1), e13614, https://doi.org/10.1111/ppl.13614

Original version:

Camoying, Marianne; Thoms, Silke; Geuer, Jana K; Koch, Boris P; Bischof, Kai; Trimborn, Scarlett (2022): Acidification and iron limitation effects on the photophysiology, growth, carbon production, and cellular pigment and trace metal quotas of the Antarctic phytoplankton Geminigera cryophila and Pseudo‐nitzschia subcurvata. PANGAEA, https://doi.org/10.1594/PANGAEA.943573

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-05-24.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Camoying, Marianne		Study
2	Species, unique identification	Species UID		Camoying, Marianne
3	Species, unique identification (URI)	Species UID (URI)		Camoying, Marianne
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Camoying, Marianne
5	Treatment: dissolved iron	T:Fe diss	nmol/l	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
6	Treatment: partial pressure of carbon dioxide	T:pCO2	µatm	Camoying, Marianne
7	Phytoplankton growth rate	Phytopl µ	1/day	Camoying, Marianne	Light microscopy (Utermöhl 1958)
8	Growth rate, standard deviation	µ std dev	±	Camoying, Marianne	Light microscopy (Utermöhl 1958)
9	Carbon, organic, particulate	POC	pg/µm³	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
10	Carbon, organic, particulate, standard deviation	POC std dev	±	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
11	Production of particulate organic carbon	POC prod	pg/µm³/day	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
12	Particulate organic carbon, production, standard deviation	POC prod std dev	±	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
13	Nitrogen, organic, particulate	PON	pg/µm³	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
14	Particulate organic nitrogen production, standard deviation	PON prod std dev	±	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA	cell volume normalized
15	Carbon/Nitrogen ratio	C/N	mol/mol	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA
16	Carbon/Nitrogen ratio, standard deviation	C/N std dev	±	Camoying, Marianne	Elemental analyzer, HEKAtechGmbH, Euro EA
17	Iron, cellular quota	QFe	amol/#	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
18	Iron, cellular quota, standard deviation	QFe std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
19	Iron/Carbon ratio	Fe/C	µmol/mol	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
20	Iron/Carbon ratio, standard deviation	Fe/C std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
21	Manganese/Carbon ratio	Mn/C	µmol/mol	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
22	Manganese/Carbon ratio, standard deviation	Mn/C std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
23	Cobalt/Carbon ratio	Co/C	µmol/mol	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
24	Cobalt/Carbon ratio, standard deviation	Co/C std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
25	Copper/Carbon ratio	Cu/C	µmol/mol	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
26	Copper/Carbon ratio, standard deviation	Cu/C std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
27	Zinc/Carbon ratio	Zn/C	µmol/mol	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
28	Zinc/Carbon ratio, standard deviation	Zn/C std dev	±	Camoying, Marianne	Inductively coupled plasma mass spectrometer (ICP-MS), Attom, Nu Instruments
29	Chlorophyll a	Chl a	fg/µm³	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
30	Chlorophyll a, standard deviation	Chl a std dev	±	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
31	Chlorophyll c2	Chl c2	fg/µm³	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
32	Chlorophyll c2, standard deviation	Chl c2 std dev	±	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
33	Fucoxanthin	Fucoxanthin	fg/µm³	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
34	Fucoxanthin, standard deviation	Fuco std dev	±	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
35	Diadinoxanthin	Diadinoxanthin	fg/µm³	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
36	Diadinoxanthin, standard deviation	Diadinoxanthin std dev	±	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
37	Alloxanthin	Alloxanthin	fg/µm³	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
38	Alloxanthin, standard deviation	Alloxanthin std dev	±	Camoying, Marianne	Reverse phase HPLC (High Performance Liquid Chromatography)
39	Maximum photochemical quantum yield of photosystem II	Fv/Fm		Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
40	Maximum photochemical quantum yield of photosystem II, standard deviation	Fv/Fm std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
41	Maximal electron transport rate	ETR max	e/PSII/s	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
42	Maximal electron transport rate, standard deviation	ETR max std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
43	Light saturation point	Ik	µmol/m²/s	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
44	Light saturation point, standard deviation	Ik std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
45	Light use efficiency	alpha		Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
46	Light use efficiency, standard deviation	alpha std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
47	Functional absorption cross sections of photosystem II reaction centers	Sigma PSII	nm²	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
48	Functional absorption cross sections of photosystem II reaction centers, standard deviation	Sigma PSII std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
49	Functional photosystem II reaction centers	RCII	zmol/µm³	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
50	Functional photosystem II reaction centers, standard deviation	RCII std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
51	Connectivity between photosystem II	p		Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
52	Connectivity between photosystem II, standard deviation	p std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
53	Maximum photochemical quantum yield of photosystem II, recovery	Fv/Fm recovery	%	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
54	Maximum photochemical quantum yield of photosystem II, recovery, standard deviation	Fv/Fm recovery std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
55	Irradiance	E	µmol/m²/s	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
56	Electron transport rate, absolute	aETR	e/PSII/s	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
57	Electron transport rate, absolute, standard deviation	aETR std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
58	Non photochemical quenching	NPQ		Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
59	Non photochemical quenching, standard deviation	NPQ std dev	±	Camoying, Marianne	Fluorometer, fast repetition rate (FRRF)
60	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Camoying, Marianne	Calculated using CO2SYS
61	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Camoying, Marianne	Calculated using CO2SYS
62	Carbon, inorganic, dissolved	DIC	µmol/kg	Camoying, Marianne	Calculated using CO2SYS
63	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Camoying, Marianne	Calculated using CO2SYS
64	pH	pH		Camoying, Marianne	Potentiometric	NBS scale
65	pH, standard deviation	pH std dev	±	Camoying, Marianne	Potentiometric	NBS scale
66	Alkalinity, total	AT	µmol/kg	Camoying, Marianne	Potentiometric titration
67	Alkalinity, total, standard deviation	AT std dev	±	Camoying, Marianne	Potentiometric titration
68	Temperature, water	Temp	°C	Camoying, Marianne
69	Salinity	Sal		Camoying, Marianne
70	Phosphate	PHSPHT	µmol/kg	Camoying, Marianne
71	Silicate	SILCAT	µmol/kg	Camoying, Marianne
72	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
73	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
74	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
75	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
76	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
77	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
78	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
79	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
80	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
81	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

8948 data points

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